Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinus_20carpio_20[refseq_20GCF_5F000951615.1_202014-11-03] 9,378 sequences; 1,713,658,011 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq39 89.7 1e-12 seq40 84.2 4e-11 >seq39 Length=16255708 Score = 89.7 bits (98), Expect = 1e-12 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 101918 GTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGG 101977 || || |||||||| || ||||||||||||||| ||| | || || || ||||||||| Sbjct 10356481 GTGGCTTTTGCTGCTGTAGAAGGAATCTTCTTTTCTGGGTCTTTTGCTTCTATTTTCTGG 10356422 Query 101978 ATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGA 102021 | ||||| || || | ||||||| ||||||| ||||||||| Sbjct 10356421 CTAAAGAAGAGAGGACTCATGCCTGGACTCACCTTCTCCAATGA 10356378 >seq40 Length=23490330 Score = 84.2 bits (92), Expect = 4e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 101918 GTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGG 101977 || || |||||||| || ||||||||||||||| ||| | || || || ||||||||| Sbjct 14324014 GTGGCTTTTGCTGCTGTGGAAGGAATCTTCTTTTCTGGGTCTTTTGCTTCTATTTTCTGG 14323955 Query 101978 ATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGA 102021 | ||||| || || | |||| || ||||||| ||||||||| Sbjct 14323954 CTAAAGAAGAGAGGACTCATGCCGGGACTCACCTTCTCCAATGA 14323911 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989465095915990