Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinus_20carpio_20[refseq_20GCF_5F000951615.1_202014-11-03] 9,378 sequences; 1,713,658,011 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq39 111 2e-19 seq40 105 8e-18 seq230 102 1e-16 seq24 98.7 1e-15 seq445 84.2 3e-11 >seq39 Length=16255708 Score = 111 bits (122), Expect = 2e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||| ||||| || || | ||| || || || |||||||| ||||| || || | ||| | Sbjct 10356358 CCTCATCTCTGCTGATAAGTTCATTGGAGAAGGTGAGTCCAGGCATGAGTCCTCTCTTCT 10356417 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | ||||| || || ||||| || || || |||||||||||||||||||| |||||||| | Sbjct 10356418 TTAGCCAGAAAATAGAAGCAAAAGACCCAGAAAAGAAGATTCCTTCTACAGCAGCAAAAG 10356477 Query 33724 CAATAAGTCTCTCTCC 33739 | | | |||||| || Sbjct 10356478 CCACCACTCTCTCCCC 10356493 >seq40 Length=23490330 Score = 105 bits (116), Expect = 8e-18 Identities = 105/136 (77%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||| ||||| || || | ||| || || || |||||||| ||||| || || | ||| | Sbjct 14323891 CCTCATCTCTGCTGATAAGTTCATTGGAGAAGGTGAGTCCCGGCATGAGTCCTCTCTTCT 14323950 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | ||||| || || ||||| || || || ||||||||||||||||| || |||||||| | Sbjct 14323951 TTAGCCAGAAAATAGAAGCAAAAGACCCAGAAAAGAAGATTCCTTCCACAGCAGCAAAAG 14324010 Query 33724 CAATAAGTCTCTCTCC 33739 | | | |||||| || Sbjct 14324011 CCACCACTCTCTCCCC 14324026 Score = 86.0 bits (94), Expect = 8e-12 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 33842 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 33901 |||||| | ||||| || ||||| ||||| |||||||| || || |||||||| ||||| Sbjct 14324448 ATCTTTGATGTAAGTGTCAATCAACAGACTGTACATTTCGGAGTGGATGTTTTCCATGGC 14324507 Query 33902 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTC 33946 ||||| ||||||||||| || | || || || | || ||||| Sbjct 14324508 AATCTGGAATCCGTAGAAGCAACGGGCTTCAGTTACTTGGACTTC 14324552 >seq230 Length=1256464 Score = 102 bits (112), Expect = 1e-16 Identities = 126/170 (74%), Gaps = 2/170 (1%) Strand=Plus/Minus Query 62113 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 62172 |||| || || || ||||| || || |||||| ||| | || || || || ||||| | Sbjct 1149257 TCCAGCCATAGAAGTGCATGCTGGTCAGTTTGCCATAGTTGGGTTCAGCGATGTGGATGT 1149198 Query 62173 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 62232 | | || || || || || ||||||||||| |||||||||||||| |||| ||| |||| Sbjct 1149197 TGAGGGACTGGCTCTGGTCAATGAAGGCTCCTCTGTCTGCAGCCATCTTTAAGATGGTCT 1149138 Query 62233 TTTGTGCAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATCTTCTGG 62281 |||| | || ||||| | || ||||| | ||| ||| | || ||||| Sbjct 1149137 TTTGAGAGATCTCCCACACCGTCTTATACAGCTC-CTTCAGGTCATCTGG 1149089 >seq24 Length=12449181 Score = 98.7 bits (108), Expect = 1e-15 Identities = 80/97 (82%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 34079 CACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATG 34138 ||| || || |||||||| ||||| |||| || | ||| ||||| |||||||||||| | Sbjct 10126977 CACCTCCTCAACTGTCCAGAATGAGGCCTGAGCTTGTTTGTACATTTTCCAGATGTCAGG 10127036 Query 34139 ATATTGGATTGGGAAAATAACAAATCTATTTGGATTT 34175 ||| |||||||||||||| ||||||| ||||| ||| Sbjct 10127037 ATACTGGATTGGGAAAATGACAAATCGCTTTGGGTTT 10127073 Score = 96.9 bits (106), Expect = 4e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||| ||||| || || | ||| || || | |||||||||||||| ||||| | || | Sbjct 10123637 CCTCATCTCTGCTGATGAGTTCATTGGAGTAGGTGAGTCCGGGCATCAGGCCTCTTTTCT 10123696 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | | ||| | |||| ||| |||||||| || |||||||| ||||| ||||| ||||| | Sbjct 10123697 TCAACCAGTAGATGGCAGCAAATGATCCAGAGAAGAAGATGCCTTCCACTGCTGCAAATG 10123756 Query 33724 CAATAAGTCTCTCTCC 33739 | | | || |||||| Sbjct 10123757 CTACTAATCGCTCTCC 10123772 >seq445 Length=552131 Score = 84.2 bits (92), Expect = 3e-11 Identities = 140/200 (70%), Gaps = 2/200 (1%) Strand=Plus/Minus Query 62626 CATATGTATCATATGGTCCTTCCTTCT-CAGCTAGTTTACAACTCGCCTCTAATGCACCG 62684 |||| || ||||| || || | |||| |||| || | ||| || | ||| | ||| || Sbjct 61124 CATAAGTTTCATACGGCCCA-CATTCTGCAGCCAGCTCACAGCTGGACTCCAGCGCAGCG 61066 Query 62685 TAATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGGA 62744 || || |||||||||||||||| | || || ||| || || | ||| ||||| || Sbjct 61065 TAGTAGATGGTTTCAAAGATCTGTGTGTTGAGGAGTTGAGCCTCTGCGCTCTCAAAGGGG 61006 Query 62745 TAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGT 62804 || | ||| ||||| || || || | || ||||| || |||||||| || || || Sbjct 61005 AAACGCATGAGGATAAAGGCATCAGCCAGACCCTGAACGCCGATACCGATGGGCCTGTGA 60946 Query 62805 CTCTTATTAGAGATTTCAGC 62824 | ||| || ||| | || || Sbjct 60945 CGCTTGTTGGAGTTCTCTGC 60926 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629743769631840