Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinus_20carpio_20[refseq_20GCF_5F000951615.1_202014-11-03] 9,378 sequences; 1,713,658,011 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq24 113 4e-20 seq40 111 1e-19 seq39 107 2e-18 >seq24 Length=12449181 Score = 113 bits (124), Expect = 4e-20 Identities = 109/139 (78%), Gaps = 1/139 (1%) Strand=Plus/Plus Query 11649 AACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGtt 11708 ||||| | ||||| || || |||||||| || | || | ||||||||||| |||| || Sbjct 10123635 AACCT-CATCTCTGCTGATGAGTTCATTGGAGTAGGTGAGTCCGGGCATCAGGCCTCTTT 10123693 Query 11709 tttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAA 11768 | || | ||| | || ||||||||||| ||||| ||||| || || ||||| ||||||| Sbjct 10123694 TCTTCAACCAGTAGATGGCAGCAAATGATCCAGAGAAGAAGATGCCTTCCACTGCTGCAA 10123753 Query 11769 ATGCTACTACTCTTTCTCC 11787 ||||||||| || ||||| Sbjct 10123754 ATGCTACTAATCGCTCTCC 10123772 >seq40 Length=23490330 Score = 111 bits (122), Expect = 1e-19 Identities = 105/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 11654 TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttttt 11713 || ||||| || || |||||||| || || || | ||| ||||| | ||||| || ||| Sbjct 14323893 TCATCTCTGCTGATAAGTTCATTGGAGAAGGTGAGTCCCGGCATGAGTCCTCTCTTCTTT 14323952 Query 11714 ATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCT 11773 | ||| || |||| |||||| || ||||||||||| ||||| |||||||| ||||| || Sbjct 14323953 AGCCAGAAAATAGAAGCAAAAGACCCAGAAAAGAAGATTCCTTCCACAGCAGCAAAAGCC 14324012 Query 11774 ACTACTCTTTCTCC 11787 || ||||| || || Sbjct 14324013 ACCACTCTCTCCCC 14324026 >seq39 Length=16255708 Score = 107 bits (118), Expect = 2e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 11654 TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttttt 11713 || ||||| || || |||||||| || || || | ||| ||||| | ||||| || ||| Sbjct 10356360 TCATCTCTGCTGATAAGTTCATTGGAGAAGGTGAGTCCAGGCATGAGTCCTCTCTTCTTT 10356419 Query 11714 ATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCT 11773 | ||| || |||| |||||| || ||||||||||| ||||| || ||||| ||||| || Sbjct 10356420 AGCCAGAAAATAGAAGCAAAAGACCCAGAAAAGAAGATTCCTTCTACAGCAGCAAAAGCC 10356479 Query 11774 ACTACTCTTTCTCC 11787 || ||||| || || Sbjct 10356480 ACCACTCTCTCCCC 10356493 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468469877180320