Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinus_20carpio_20[refseq_20GCF_5F000951615.1_202014-11-03] 9,378 sequences; 1,713,658,011 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq39 111 2e-19 seq40 105 9e-18 seq230 102 1e-16 seq24 102 1e-16 seq32 84.2 3e-11 >seq39 Length=16255708 Score = 111 bits (122), Expect = 2e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||| ||||| || || | ||| ||||| || |||||||| ||||| || || | ||| | Sbjct 10356358 CCTCATCTCTGCTGATAAGTTCATTGGAGAAGGTGAGTCCAGGCATGAGTCCTCTCTTCT 10356417 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | ||||| || || || ||||| || ||||||||||| ||||||||||| || ||||| | Sbjct 10356418 TTAGCCAGAAAATAGAAGCAAAAGACCCAGAAAAGAAGATTCCTTCTACAGCAGCAAAAG 10356477 Query 36300 CAATAAGTCTCTCTCC 36315 | | | |||||| || Sbjct 10356478 CCACCACTCTCTCCCC 10356493 Score = 84.2 bits (92), Expect = 3e-11 Identities = 61/71 (86%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 36668 GTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGA 36727 ||||| || || ||||||||||| || ||||| | |||||||||||| || ||||||||| Sbjct 10357388 GTCCAGAAGGAGGCCTCTGCCTTCTTGTACATCTGCCAGATGTCATGGTACTGAATTGGA 10357447 Query 36728 AAAATAACAAA 36738 ||||| ||||| Sbjct 10357448 AAAATGACAAA 10357458 >seq40 Length=23490330 Score = 105 bits (116), Expect = 9e-18 Identities = 105/136 (77%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||| ||||| || || | ||| ||||| || |||||||| ||||| || || | ||| | Sbjct 14323891 CCTCATCTCTGCTGATAAGTTCATTGGAGAAGGTGAGTCCCGGCATGAGTCCTCTCTTCT 14323950 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | ||||| || || || ||||| || ||||||||||| |||||||| || || ||||| | Sbjct 14323951 TTAGCCAGAAAATAGAAGCAAAAGACCCAGAAAAGAAGATTCCTTCCACAGCAGCAAAAG 14324010 Query 36300 CAATAAGTCTCTCTCC 36315 | | | |||||| || Sbjct 14324011 CCACCACTCTCTCCCC 14324026 >seq230 Length=1256464 Score = 102 bits (112), Expect = 1e-16 Identities = 126/170 (74%), Gaps = 2/170 (1%) Strand=Plus/Minus Query 64906 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 64965 |||| || || || ||||| || || |||||| ||| | || || || || ||||| | Sbjct 1149257 TCCAGCCATAGAAGTGCATGCTGGTCAGTTTGCCATAGTTGGGTTCAGCGATGTGGATGT 1149198 Query 64966 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 65025 | | || || || || || ||||||||||| |||||||||||||| |||| ||| |||| Sbjct 1149197 TGAGGGACTGGCTCTGGTCAATGAAGGCTCCTCTGTCTGCAGCCATCTTTAAGATGGTCT 1149138 Query 65026 TTTGTGGAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATCTTCTGG 65074 |||| | || ||||| | || ||||| | ||| ||| | || ||||| Sbjct 1149137 TTTGAGAGATCTCCCACACCGTCTTATACAGCTC-CTTCAGGTCATCTGG 1149089 >seq24 Length=12449181 Score = 102 bits (112), Expect = 1e-16 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||| ||||| || || | ||| ||||| | |||||||||||||| ||||| | || | Sbjct 10123637 CCTCATCTCTGCTGATGAGTTCATTGGAGTAGGTGAGTCCGGGCATCAGGCCTCTTTTCT 10123696 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | | ||| | |||| |||||||||||||| ||||| || ||||| ||||| ||||| | Sbjct 10123697 TCAACCAGTAGATGGCAGCAAATGATCCAGAGAAGAAGATGCCTTCCACTGCTGCAAATG 10123756 Query 36300 CAATAAGTCTCTCTCC 36315 | | | || |||||| Sbjct 10123757 CTACTAATCGCTCTCC 10123772 Score = 87.8 bits (96), Expect = 2e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 36655 CACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATG 36714 ||| || || |||||||| ||||| |||| || | ||| ||||| |||||||||||| | Sbjct 10126977 CACCTCCTCAACTGTCCAGAATGAGGCCTGAGCTTGTTTGTACATTTTCCAGATGTCAGG 10127036 Query 36715 ATATTGAATTGGAAAAATAACAAATCTATTTTGATTTT 36752 ||| || ||||| ||||| ||||||| ||| | |||| Sbjct 10127037 ATACTGGATTGGGAAAATGACAAATCGCTTTGGGTTTT 10127074 >seq32 Length=26100072 Score = 84.2 bits (92), Expect = 3e-11 Identities = 73/91 (80%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 36650 ATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATG 36709 |||| || || || |||||||| ||||| |||| || | ||| ||||| ||||||||| Sbjct 10136387 ATATTTACCTCCTCGACTGTCCAGAATGAAGCCTGAGCTTGTTTGTACATTTTCCAGATG 10136446 Query 36710 TCATGATATTGAATTGGAAAAATAACAAATC 36740 || |||| ||||| |||||||| ||||||| Sbjct 10136447 TCGGGATACTGAATAGGAAAAATGACAAATC 10136477 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658095645693520