Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinus_20carpio_20[refseq_20GCF_5F000951615.1_202014-11-03] 9,378 sequences; 1,713,658,011 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq39 129 8e-25 seq40 123 4e-23 seq24 111 2e-19 seq230 105 1e-17 >seq39 Length=16255708 Score = 129 bits (142), Expect = 8e-25 Identities = 110/136 (81%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||| ||||| || || ||||| ||||| || |||||||| ||||| || || | ||| | Sbjct 10356358 CCTCATCTCTGCTGATAAGTTCATTGGAGAAGGTGAGTCCAGGCATGAGTCCTCTCTTCT 10356417 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | ||||| || || || ||||| |||||||||||||||||||||||||| || ||||| | Sbjct 10356418 TTAGCCAGAAAATAGAAGCAAAAGACCCAGAAAAGAAGATTCCTTCTACAGCAGCAAAAG 10356477 Query 50102 CAACAAGTCTCTCTCC 50117 | || | |||||| || Sbjct 10356478 CCACCACTCTCTCCCC 10356493 >seq40 Length=23490330 Score = 123 bits (136), Expect = 4e-23 Identities = 109/136 (80%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||| ||||| || || ||||| ||||| || |||||||| ||||| || || | ||| | Sbjct 14323891 CCTCATCTCTGCTGATAAGTTCATTGGAGAAGGTGAGTCCCGGCATGAGTCCTCTCTTCT 14323950 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | ||||| || || || ||||| ||||||||||||||||||||||| || || ||||| | Sbjct 14323951 TTAGCCAGAAAATAGAAGCAAAAGACCCAGAAAAGAAGATTCCTTCCACAGCAGCAAAAG 14324010 Query 50102 CAACAAGTCTCTCTCC 50117 | || | |||||| || Sbjct 14324011 CCACCACTCTCTCCCC 14324026 Score = 86.0 bits (94), Expect = 9e-12 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 50220 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 50279 |||||| | ||||| || ||||| ||||| |||||||| || || |||||||| ||||| Sbjct 14324448 ATCTTTGATGTAAGTGTCAATCAACAGACTGTACATTTCGGAGTGGATGTTTTCCATGGC 14324507 Query 50280 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTC 50324 ||||| ||||||||||| || | || || || | || ||||| Sbjct 14324508 AATCTGGAATCCGTAGAAGCAACGGGCTTCAGTTACTTGGACTTC 14324552 >seq24 Length=12449181 Score = 111 bits (122), Expect = 2e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||| ||||| || || ||||| ||||| | |||||||||||||| ||||| | || | Sbjct 10123637 CCTCATCTCTGCTGATGAGTTCATTGGAGTAGGTGAGTCCGGGCATCAGGCCTCTTTTCT 10123696 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | | ||| | |||| |||||||| ||||| |||||||| ||||| ||||| ||||| | Sbjct 10123697 TCAACCAGTAGATGGCAGCAAATGATCCAGAGAAGAAGATGCCTTCCACTGCTGCAAATG 10123756 Query 50102 CAACAAGTCTCTCTCC 50117 | || | || |||||| Sbjct 10123757 CTACTAATCGCTCTCC 10123772 Score = 96.9 bits (106), Expect = 5e-15 Identities = 79/96 (82%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 50458 ACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGA 50517 || || || |||||||| ||||| |||| || | ||| ||||| |||||||||||| || Sbjct 10126978 ACCTCCTCAACTGTCCAGAATGAGGCCTGAGCTTGTTTGTACATTTTCCAGATGTCAGGA 10127037 Query 50518 TATTGGATTGGGAAAATAACAAATCTATTTGGATTT 50553 || |||||||||||||| ||||||| ||||| ||| Sbjct 10127038 TACTGGATTGGGAAAATGACAAATCGCTTTGGGTTT 10127073 >seq230 Length=1256464 Score = 105 bits (116), Expect = 1e-17 Identities = 127/170 (75%), Gaps = 2/170 (1%) Strand=Plus/Minus Query 78785 TCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 78844 |||| || ||||| ||||| || || |||||| ||| | || || || || ||||| | Sbjct 1149257 TCCAGCCATAGAAGTGCATGCTGGTCAGTTTGCCATAGTTGGGTTCAGCGATGTGGATGT 1149198 Query 78845 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 78904 | | || || || || || ||||||||||| |||||||||||||| |||| ||| |||| Sbjct 1149197 TGAGGGACTGGCTCTGGTCAATGAAGGCTCCTCTGTCTGCAGCCATCTTTAAGATGGTCT 1149138 Query 78905 TTTGTGGAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATCTTCTGG 78953 |||| | || ||||| | || ||||| | ||| ||| | || ||||| Sbjct 1149137 TTTGAGAGATCTCCCACACCGTCTTATACAGCTC-CTTCAGGTCATCTGG 1149089 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718184600939920