Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinus_20carpio_20[refseq_20GCF_5F000951615.1_202014-11-03] 9,378 sequences; 1,713,658,011 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq24 107 2e-18 seq39 86.0 6e-12 >seq24 Length=12449181 Score = 107 bits (118), Expect = 2e-18 Identities = 107/139 (77%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 13894 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13953 |||||||||| || || ||||| || || | || | ||| ||||||| |||| ||| | Sbjct 10123637 CCTCATCTCTGCTGATGAGTTCATTGGAGTAGGTGAGTCCGGGCATCAGGCCTCTTTTCT 10123696 Query 13954 ttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14013 | ||||| | || ||||||||||| || || ||||| || || || ||||| ||||| | Sbjct 10123697 TCAACCAGTAGATGGCAGCAAATGATCCAGAGAAGAAGATGCCTTCCACTGCTGCAAATG 10123756 Query 14014 CTATTAATCGTTCTCCAAA 14032 ||| |||||| ||||| || Sbjct 10123757 CTACTAATCGCTCTCCTAA 10123775 >seq39 Length=16255708 Score = 86.0 bits (94), Expect = 6e-12 Identities = 84/107 (79%), Gaps = 1/107 (1%) Strand=Plus/Plus Query 14142 ATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGA 14201 ||||| || ||||| | | || |||||||||||||||||||||||||| || ||||| Sbjct 10356920 ATGTAGGTGTCAATCAACAGACTGTACATTTCAGAGTGTATGTTTTCCATGGCAATCTGG 10356979 Query 14202 AAACCATAAAAGCATCTAGCTTCCGACCATTGTACTTCC-GAGTAAA 14247 ||||| || ||||| | ||||| | | ||| || ||| ||||||| Sbjct 10356980 AAACCGTAGAAGCAACGGGCTTCAGTCACTTGGACCTCCTGAGTAAA 10357026 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479671763885200