Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinus_20carpio_20[refseq_20GCF_5F000951615.1_202014-11-03] 9,378 sequences; 1,713,658,011 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq39 82.4 7e-11 >seq39 Length=16255708 Score = 82.4 bits (90), Expect = 7e-11 Identities = 83/107 (78%), Gaps = 1/107 (1%) Strand=Plus/Plus Query 13930 ATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGA 13989 ||||| || ||||| | | || ||||||||||||||||||||||| || || ||||| Sbjct 10356920 ATGTAGGTGTCAATCAACAGACTGTACATTTCAGAGTGTATGTTTTCCATGGCAATCTGG 10356979 Query 13990 AAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCC-GAGTAAA 14035 ||||| || || || | ||||| | | ||| |||||| ||||||| Sbjct 10356980 AAACCGTAGAAGCAACGGGCTTCAGTCACTTGGACCTCCTGAGTAAA 10357026 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478532697427920