Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinus_20carpio_20[refseq_20GCF_5F000951615.1_202014-11-03] 9,378 sequences; 1,713,658,011 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq445 102 1e-16 seq39 84.2 3e-11 >seq445 Length=552131 Score = 102 bits (112), Expect = 1e-16 Identities = 109/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 97179 CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTCTACAAG 97238 |||||| | |||||| | | ||||| ||||||||| || || ||||| ||||||||| Sbjct 60424 CTGTGGTATGCCATCATTGAGTCTCAGACAGAGACTGGCACACCCTACATGCTCTACAAG 60483 Query 97239 GATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCCAATCTG 97298 ||| || || ||||| || ||||| | || |||||||||| || || || || Sbjct 60484 GATGCCTGCAACCGCAAAAGTAACCAGCAGAACCTGGGCACCATTAAATGCAGTAACTTG 60543 Query 97299 TGCACGGAAATTGTAGAGTACGCC 97322 ||||| ||||||||||||||| || Sbjct 60544 TGCACAGAAATTGTAGAGTACACC 60567 >seq39 Length=16255708 Score = 84.2 bits (92), Expect = 3e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 125421 GACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCC 125480 || ||| ||||||| || || || ||||| || ||||||||||| || |||||| | Sbjct 10356490 GAGAGAGTGGTGGCTTTTGCTGCTGTAGAAGGAATCTTCTTTTCTGGGTCTTTTGCTTCT 10356431 Query 125481 ATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGAC 125521 || || ||||| |||||| | ||||||||||| ||||| || Sbjct 10356430 ATTTTCTGGCTAAAGAAGAGAGGACTCATGCCTGGACTCAC 10356390 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740972329335280