Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinus_20carpio_20[refseq_20GCF_5F000951615.1_202014-11-03] 9,378 sequences; 1,713,658,011 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq39 109 1e-18 seq40 104 5e-17 seq24 104 5e-17 >seq39 Length=16255708 Score = 109 bits (120), Expect = 1e-18 Identities = 105/134 (78%), Gaps = 2/134 (1%) Strand=Plus/Minus Query 269126 GGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCC 269185 ||||| || | || |||||||| ||||||||||| || |||||||| ||||||||||| Sbjct 10356491 GGAGAGAG--TGGTGGCTTTTGCTGCTGTAGAAGGAATCTTCTTTTCTGGGTCTTTTGCT 10356434 Query 269186 GCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTG 269245 |||| || ||| | ||||| ||||| || ||||| ||| | || ||||| || ||| | Sbjct 10356433 TCTATTTTCTGGCTAAAGAAGAGAGGACTCATGCCTGGACTCACCTTCTCCAATGAACTT 10356374 Query 269246 ATAAGCAGGGACGA 269259 || ||||| || || Sbjct 10356373 ATCAGCAGAGATGA 10356360 >seq40 Length=23490330 Score = 104 bits (114), Expect = 5e-17 Identities = 104/134 (78%), Gaps = 2/134 (1%) Strand=Plus/Minus Query 269126 GGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCC 269185 ||||| || | || |||||||| ||||| ||||| || |||||||| ||||||||||| Sbjct 14324024 GGAGAGAG--TGGTGGCTTTTGCTGCTGTGGAAGGAATCTTCTTTTCTGGGTCTTTTGCT 14323967 Query 269186 GCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTG 269245 |||| || ||| | ||||| ||||| || ||||| ||| | || ||||| || ||| | Sbjct 14323966 TCTATTTTCTGGCTAAAGAAGAGAGGACTCATGCCGGGACTCACCTTCTCCAATGAACTT 14323907 Query 269246 ATAAGCAGGGACGA 269259 || ||||| || || Sbjct 14323906 ATCAGCAGAGATGA 14323893 >seq24 Length=12449181 Score = 104 bits (114), Expect = 5e-17 Identities = 107/139 (77%), Gaps = 1/139 (1%) Strand=Plus/Minus Query 269126 GGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCC 269185 ||||| | ||||| || ||||| || || ||||| || ||||| || || || ||||| Sbjct 10123772 GGAGAGCGATTAGTAGCATTTGCAGCAGTGGAAGGCATCTTCTTCTCTGGATCATTTGCT 10123713 Query 269186 GCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTG 269245 || |||| |||||||||||||||||||| ||||| ||| | || | ||| || ||| | Sbjct 10123712 GCCATCTACTGGTTGAAGAAAAGAGGCCTGATGCCCGGACTCACCTACTCCAATGAACTC 10123653 Query 269246 ATAAGCAGGGACGAAGGTT 269264 || ||||| || | ||||| Sbjct 10123652 ATCAGCAGAGATG-AGGTT 10123635 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151260053005624