Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinus_20carpio_20[refseq_20GCF_5F000951615.1_202014-11-03] 9,378 sequences; 1,713,658,011 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq3292 91.5 2e-13 seq8 91.5 2e-13 seq3 91.5 2e-13 >seq3292 Length=58541 Score = 91.5 bits (100), Expect = 2e-13 Identities = 91/118 (77%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 38241 AACATAGCCGGTTTGATCGGGGGAAATAAAAACATGTAAAAATTTTTCTAATCGAGATGC 38300 |||| | ||||||||||| || ||||| | |||||||| |||||| | ||| | | Sbjct 56437 AACAAAACCGGTTTGATCAGGTGAAATGACTCCATGTAAAGTTTTTTCAAGCCGAAAGGA 56496 Query 38301 TAAGATTTTAGCCAGTATCTTATAATCACAGTTTAAAAGAGAAACTGGTCTATAAGAA 38358 ||| | |||||| |||||||| |||||||| |||||||| || | || | ||||||| Sbjct 56497 TAATACTTTAGCTAGTATCTTGTAATCACAATTTAAAAGCGATATGGGGCGATAAGAA 56554 >seq8 Length=19797740 Score = 91.5 bits (100), Expect = 2e-13 Identities = 91/118 (77%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 38241 AACATAGCCGGTTTGATCGGGGGAAATAAAAACATGTAAAAATTTTTCTAATCGAGATGC 38300 |||| | ||||||||||| || ||||| | |||||||| |||||| | ||| | | Sbjct 15308978 AACAAAACCGGTTTGATCAGGTGAAATGACTCCATGTAAAGTTTTTTCAAGCCGAAAGGA 15309037 Query 38301 TAAGATTTTAGCCAGTATCTTATAATCACAGTTTAAAAGAGAAACTGGTCTATAAGAA 38358 ||| | |||||| |||||||| |||||||| |||||||| || | || | ||||||| Sbjct 15309038 TAATACTTTAGCTAGTATCTTGTAATCACAATTTAAAAGCGATATGGGGCGATAAGAA 15309095 >seq3 Length=20567433 Score = 91.5 bits (100), Expect = 2e-13 Identities = 91/118 (77%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 38241 AACATAGCCGGTTTGATCGGGGGAAATAAAAACATGTAAAAATTTTTCTAATCGAGATGC 38300 |||| | ||||||||||| || ||||| | |||||||| |||||| | ||| | | Sbjct 2935153 AACAAAACCGGTTTGATCAGGTGAAATGACTCCATGTAAAGTTTTTTCAAGCCGAAAGGA 2935212 Query 38301 TAAGATTTTAGCCAGTATCTTATAATCACAGTTTAAAAGAGAAACTGGTCTATAAGAA 38358 ||| | |||||| |||||||| |||||||| |||||||| || | || | ||||||| Sbjct 2935213 TAATACTTTAGCTAGTATCTTGTAATCACAATTTAAAAGCGATATGGGGCGATAAGAA 2935270 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595802148904800