Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinus_20carpio_20[refseq_20GCF_5F000951615.1_202014-11-03] 9,378 sequences; 1,713,658,011 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq10 100 1e-16 seq6048 93.3 2e-14 seq9 91.5 8e-14 seq4128 87.8 9e-13 seq4 86.0 3e-12 seq4097 84.2 1e-11 seq3589 84.2 1e-11 seq1188 84.2 1e-11 seq517 84.2 1e-11 seq11 84.2 1e-11 seq3 84.2 1e-11 seq782 82.4 4e-11 seq38 82.4 4e-11 seq30 82.4 4e-11 seq13 82.4 4e-11 >seq10 Length=22665327 Score = 100 bits (110), Expect = 1e-16 Identities = 78/94 (83%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 11437 AATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTA 11496 ||| ||||| ||| || |||||||| | |||||||||| ||||||| ||||||||| Sbjct 8165002 AATAAATAACAAAACACATTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTA 8164943 Query 11497 GCACGACGCTCTRACCAACTGAGCTAATGGGCCG 11530 |||| ||||||| |||||||||||||| ||||| Sbjct 8164942 GCACCACGCTCTAACCAACTGAGCTAACCGGCCG 8164909 Score = 89.7 bits (98), Expect = 3e-13 Identities = 77/95 (81%), Gaps = 1/95 (1%) Strand=Plus/Minus Query 11435 AGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTAT 11494 |||| ||| ||||| | | ||||||| | |||||||||| ||||||| ||||||| Sbjct 7885610 AGAAATAACAAAAA-TAGAGTTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTAT 7885552 Query 11495 TAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||| ||||||| |||||||||||||| |||| Sbjct 7885551 TAGCACCACGCTCTAACCAACTGAGCTAACCGGCC 7885517 Score = 89.7 bits (98), Expect = 3e-13 Identities = 77/95 (81%), Gaps = 1/95 (1%) Strand=Plus/Minus Query 11435 AGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTAT 11494 |||| ||| ||||| | | ||||||| | |||||||||| ||||||| ||||||| Sbjct 7885982 AGAAATAACAAAAA-TAGAGTTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTAT 7885924 Query 11495 TAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||| ||||||| |||||||||||||| |||| Sbjct 7885923 TAGCACCACGCTCTAACCAACTGAGCTAACCGGCC 7885889 Score = 82.4 bits (90), Expect = 4e-11 Identities = 70/85 (82%), Gaps = 3/85 (4%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||| ||||| ||||||| |||||||||||||| || Sbjct 19189430 GGATCGAACCCGCGACCTTGGCGTTATCAGCACCACGCTCTAACCAACTGAGCTAACCGG 19189371 Query 11528 CCGTCGACGATTGT-GATTTTTCAT 11551 ||| || |||| | | | |||||| Sbjct 19189370 CCG--GATGATTTTAGCTCTTTCAT 19189348 >seq6048 Length=1594161 Score = 93.3 bits (102), Expect = 2e-14 Identities = 76/93 (82%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 11437 AATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTA 11496 ||| ||||||||| | ||||||| | |||||||||| ||||||| ||||||||| Sbjct 1546407 AATAAATAAAAAACCGCTTTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTA 1546466 Query 11497 GCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||| ||||||| |||||||||||||| |||| Sbjct 1546467 GCACCACGCTCTAACCAACTGAGCTAACCGGCC 1546499 >seq9 Length=24322175 Score = 91.5 bits (100), Expect = 8e-14 Identities = 72/87 (83%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 ||||| ||||||||| | |||||||||| ||||||| ||||||||||||| ||| Sbjct 16213596 AAAAAGTTAATTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCACG 16213537 Query 11505 CTCTRACCAACTGAGCTAATGGGCCGT 11531 |||| |||||||||||||| |||||| Sbjct 16213536 CTCTAACCAACTGAGCTAACCGGCCGT 16213510 >seq4128 Length=13546 Score = 87.8 bits (96), Expect = 9e-13 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||| | | |||||||||| ||||||| ||||||||||||| ||||||| |||||| Sbjct 13265 TGGCCCGTACAGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAAC 13206 Query 11516 TGAGCTAATGGGCCG 11530 |||||||| ||||| Sbjct 13205 TGAGCTAACCGGCCG 13191 >seq4 Length=11347241 Score = 86.0 bits (94), Expect = 3e-12 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 ||||||| | |||||||||| ||||||| ||||||||||||| ||||||| ||||| Sbjct 4791547 TTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAA 4791606 Query 11515 CTGAGCTAATGGGCCG 11530 ||||||||| ||||| Sbjct 4791607 CTGAGCTAACCGGCCG 4791622 >seq4097 Length=48138 Score = 84.2 bits (92), Expect = 1e-11 Identities = 56/63 (89%), Gaps = 0/63 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 9641 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 9582 Query 11528 CCG 11530 ||| Sbjct 9581 CCG 9579 Score = 84.2 bits (92), Expect = 1e-11 Identities = 56/63 (89%), Gaps = 0/63 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| |||||||| ||||||||||||| ||||||| ||| |||||||||| || Sbjct 11158 GGATCGAACCCTCGACCTTGGCGTTATTAGCACCACGCTCTAACCCACTGAGCTAACCGG 11099 Query 11528 CCG 11530 ||| Sbjct 11098 CCG 11096 Score = 84.2 bits (92), Expect = 1e-11 Identities = 56/63 (89%), Gaps = 0/63 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 19914 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 19855 Query 11528 CCG 11530 ||| Sbjct 19854 CCG 19852 Score = 84.2 bits (92), Expect = 1e-11 Identities = 56/63 (89%), Gaps = 0/63 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| |||||||| ||||||||||||| ||||||| ||| |||||||||| || Sbjct 45738 GGATCGAACCCTCGACCTTGGCGTTATTAGCACCACGCTCTAACCCACTGAGCTAACCGG 45679 Query 11528 CCG 11530 ||| Sbjct 45678 CCG 45676 >seq3589 Length=17750 Score = 84.2 bits (92), Expect = 1e-11 Identities = 56/63 (89%), Gaps = 0/63 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 9207 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 9148 Query 11528 CCG 11530 ||| Sbjct 9147 CCG 9145 >seq1188 Length=18558 Score = 84.2 bits (92), Expect = 1e-11 Identities = 56/63 (89%), Gaps = 0/63 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 14102 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 14043 Query 11528 CCG 11530 ||| Sbjct 14042 CCG 14040 Score = 84.2 bits (92), Expect = 1e-11 Identities = 56/63 (89%), Gaps = 0/63 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 18217 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 18158 Query 11528 CCG 11530 ||| Sbjct 18157 CCG 18155 >seq517 Length=1418447 Score = 84.2 bits (92), Expect = 1e-11 Identities = 57/65 (88%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 1009799 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 1009740 Query 11528 CCGTC 11532 || || Sbjct 1009739 CCATC 1009735 >seq11 Length=19054100 Score = 84.2 bits (92), Expect = 1e-11 Identities = 56/63 (89%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 6846919 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 6846978 Query 11528 CCG 11530 ||| Sbjct 6846979 CCG 6846981 Score = 84.2 bits (92), Expect = 1e-11 Identities = 56/63 (89%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 6849130 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 6849189 Query 11528 CCG 11530 ||| Sbjct 6849190 CCG 6849192 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 6851969 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 6852028 Query 11528 CC 11529 || Sbjct 6852029 CC 6852030 >seq3 Length=20567433 Score = 84.2 bits (92), Expect = 1e-11 Identities = 56/63 (89%), Gaps = 0/63 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 15920519 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 15920460 Query 11528 CCG 11530 ||| Sbjct 15920459 CCG 15920457 >seq782 Length=434908 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 38405 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 38464 Query 11528 CC 11529 || Sbjct 38465 CC 38466 >seq38 Length=27918166 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 9986326 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 9986267 Query 11528 CC 11529 || Sbjct 9986266 CC 9986265 >seq30 Length=18521859 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 16278802 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 16278743 Query 11528 CC 11529 || Sbjct 16278742 CC 16278741 >seq13 Length=25164623 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 21630635 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 21630576 Query 11528 CC 11529 || Sbjct 21630575 CC 21630574 Lambda K H 0.638 0.409 0.919 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261461313026728