Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinus_20carpio_20[refseq_20GCF_5F000951615.1_202014-11-03] 9,378 sequences; 1,713,658,011 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq39 136 6e-27 seq4724 134 2e-26 seq2161 107 3e-18 seq5033 93.3 6e-14 seq49 91.5 2e-13 seq10 91.5 2e-13 >seq39 Length=16255708 Score = 136 bits (150), Expect = 6e-27 Identities = 174/240 (73%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 8735 GCACTCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCC 8794 ||| | ||||| ||| |||| ||||| | || || |||||||| ||||||||||| | Sbjct 9933076 GCAGTATTGACAATCTCAAAGCCCACTTTCCCACCAAAGGTGCTCGGTTTCCAGTACTCG 9933135 Query 8795 GGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGA 8854 ||||| |||||| || |||| || ||||||||||| | || || |||| || | Sbjct 9933136 GGGGAACAGATGGGATTTCCCATAAGTCCTTTGAGGGAGTAGGGGGCACCCATTTCCACC 9933195 Query 8855 ATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAAC 8914 ||| |||| || |||||||||||| | | |||||| || |||| | || | || | | Sbjct 9933196 ATGGTCTCCCCAAAGATGGCGTTGAGCCTGGGCTTCTCAACCAGCAGCCCAGCATAAAGC 9933255 Query 8915 TCCACAGCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCT 8974 |||||||| || | || || || | | ||||| ||||| || |||||||||||| Sbjct 9933256 TCCACAGCATCCACATCCCCATACATCTCTTCAAGTTCAGCAGCCATCTCCTTTTCTCCT 9933315 Score = 134 bits (148), Expect = 2e-26 Identities = 196/277 (71%), Gaps = 0/277 (0%) Strand=Plus/Plus Query 8698 CCCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCACTCTTGACGATCCCAAACCC 8757 ||||||||| || | || || | ||| | || ||| | ||||| ||| |||| || Sbjct 10045695 CCCTTTGACATTATTGCAAACCAATTTCTGTAGAGAGGCAGTGTTGACAATCTCAAAGCC 10045754 Query 8758 CACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGTTCGCCAT 8817 ||| | || || |||||||| ||||||||||| | ||||| ||||| || |||| Sbjct 10045755 CACTTTGCCACCAAAGGTGCTTGGTTTCCAGTACTCAGGGGAACAGATTGGATTTCCCAT 10045814 Query 8818 GAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGATGGCGTT 8877 || ||||||||||| | || || |||| || | ||| |||| || || || ||||| Sbjct 10045815 AAGTCCTTTGAGGGAGTAGGGGGCACCCATTTCCACCATGGTCTCCCCAAATATTGCGTT 10045874 Query 8878 GGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGTCTCCGTA 8937 || | |||||| || |||| || || || || | ||||||||| || | | ||||| Sbjct 10045875 GGTCCTGGGCTTCTCAACCAGCAACCCAGTATAAAGCTCCACAGCATCCACATGCCCGTA 10045934 Query 8938 AAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCT 8974 | | ||||| ||||| || |||||||||||| Sbjct 10045935 CAACTCTTCAAGTTCAGCAGCCATCTCCTTTTCTCCT 10045971 Score = 95.1 bits (104), Expect = 2e-14 Identities = 106/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 10287 TCACCTTTGACCCCAAGAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCG 10346 |||||| ||| || | || ||||| |||||||| || || ||||| || | | | | Sbjct 9934381 TCACCTGCGACTCCCATTGGTGTTGGGCAATCGTGCGGGACAGGAGGCAGTGTGCGAGTG 9934440 Query 10347 TAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTAGATG 10406 || ||||||||||| ||| | |||||||||||| ||| | ||||| || ||| | || Sbjct 9934441 TAGTAGGAGAGATTTGAGTAGGCTTCCCAGCTTTTGTAACCATAGTCAGCATTGAATATA 9934500 Query 10407 GGAGGGCTGTCAATCAAATCGG 10428 || ||||| ||||||| || || Sbjct 9934501 GGGGGGCTATCAATCAGATGGG 9934522 Score = 84.2 bits (92), Expect = 3e-11 Identities = 102/139 (73%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 10287 TCACCTTTGACCCCAAGAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCG 10346 |||||| ||| || | || ||||| ||||| || || || ||||| || | | | | Sbjct 10047044 TCACCTGCGACTCCCATCGGTGTTGGGCAATCATGTGGGACAGGAGGCAGTGTGCGAGTG 10047103 Query 10347 TAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTAGATG 10406 || ||||||||||| ||| | |||||||||||| ||| | ||||| || ||| | | Sbjct 10047104 TAGTAGGAGAGATTAGAGTAGGCTTCCCAGCTTTTGTAACCATAGTCAGCATTGAATAAA 10047163 Query 10407 GGAGGGCTGTCAATCAAAT 10425 || ||||| ||||||| || Sbjct 10047164 GGGGGGCTATCAATCAGAT 10047182 >seq4724 Length=9361 Score = 134 bits (148), Expect = 2e-26 Identities = 196/277 (71%), Gaps = 0/277 (0%) Strand=Plus/Plus Query 8698 CCCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCACTCTTGACGATCCCAAACCC 8757 ||||||||| || | || || | ||| | || ||| | ||||| ||| |||| || Sbjct 2890 CCCTTTGACATTATTGCAAACCAATTTCTGTAGAGAGGCAGTGTTGACAATCTCAAAGCC 2949 Query 8758 CACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGTTCGCCAT 8817 ||| | || || |||||||| ||||||||||| | ||||| ||||| || |||| Sbjct 2950 CACTTTGCCACCAAAGGTGCTTGGTTTCCAGTACTCAGGGGAACAGATTGGATTTCCCAT 3009 Query 8818 GAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGATGGCGTT 8877 || ||||||||||| | || || |||| || | ||| |||| || || || ||||| Sbjct 3010 AAGTCCTTTGAGGGAGTAGGGGGCACCCATTTCCACCATGGTCTCCCCAAATATTGCGTT 3069 Query 8878 GGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGTCTCCGTA 8937 || | |||||| || |||| || || || || | ||||||||| || | | ||||| Sbjct 3070 GGTCCTGGGCTTCTCAACCAGCAACCCAGTATAAAGCTCCACAGCATCCACATGCCCGTA 3129 Query 8938 AAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCT 8974 | | ||||| ||||| || |||||||||||| Sbjct 3130 CAACTCTTCAAGTTCAGCAGCCATCTCCTTTTCTCCT 3166 Score = 95.1 bits (104), Expect = 2e-14 Identities = 106/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 10287 TCACCTTTGACCCCAAGAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCG 10346 |||||| ||| || | || ||||| |||||||| || || ||||| || | | | | Sbjct 4513 TCACCTGCGACTCCCATTGGTGTTGGGCAATCGTGCGGGACAGGAGGCAGTGTGCGAGTG 4572 Query 10347 TAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTAGATG 10406 || ||||||||||| ||| | |||||||||||| ||| | ||||| || ||| | || Sbjct 4573 TAGTAGGAGAGATTTGAGTAGGCTTCCCAGCTTTTGTAACCATAGTCAGCATTGAATATA 4632 Query 10407 GGAGGGCTGTCAATCAAATCGG 10428 || ||||| ||||||| || || Sbjct 4633 GGGGGGCTATCAATCAGATGGG 4654 >seq2161 Length=836446 Score = 107 bits (118), Expect = 3e-18 Identities = 164/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 8751 CAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGT 8810 |||| ||||| | || || || ||||| || ||||||| | || || || || | | Sbjct 326670 CAAATCCCACTTTCCCACCAAATGTGCTCGGCATCCAGTATTCAGGAGAACAAATAGCAT 326611 Query 8811 TCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGA 8870 | |||||||||||||||| || | || || |||| ||| | || |||| || || | Sbjct 326610 TTCCCATGAGGCCTTTGAGAGAGTAGGGGGCTCCCATCTCTACCATAGTCTCCCCAAACA 326551 Query 8871 TGGCGTTGGGACGGGGCTTTTCCACCAAGAAT-CCGGTGTACAACTCCACAGCCTCGATG 8929 |||||||| | ||| || ||||| ||||| || | |||| ||| || || || ||| Sbjct 326550 CAGCGTTGGGTCTGGGTTTCTCCAC-AAGAAGGCCAGGATACAGCTCAACCGCGTCTATG 326492 Query 8930 TCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTGTTTTA 8980 | ||||| || | | | |||||| || | ||||| |||||||||||| Sbjct 326491 TGACCGTACAGCTGCTTCATTTCGGCTGCCAGCTCCTTGTCTCCTGTTTTA 326441 Score = 105 bits (116), Expect = 9e-18 Identities = 175/253 (69%), Gaps = 0/253 (0%) Strand=Plus/Minus Query 9610 TCCCCGATAATGATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGT 9669 || || || | |||||| || ||||| || || | ||||| ||| || ||||| Sbjct 325545 TCACCAATCAGGATGAGACGCGTGGTTTGGAAGATCCTCTCGTCGTCCCAGTCGGGATGC 325486 Query 9670 TCTCGTTTCAGAACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATC 9729 || | |||| | ||| || || | |||||| || | ||||| || |||| |||||| Sbjct 325485 TCCTGCTTCATGATATCACAGACACGGTTGTGCTCACGAAGCCAAATGCTAGCATACATC 325426 Query 9730 ATGAGACCAGGCACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGC 9789 || | || || ||||| || || ||||| || || ||||| | | | | ||| || Sbjct 325425 ATCAATCCTGGAACCAGACCGAAGGCCTCATGGCCCACAGCGAATCTCTGTTCTTCTGGG 325366 Query 9790 ACTTCGGGAGGATAGATCATGTGCACCTGGACATCTTTGACCGAGGGGGGATACATTTCA 9849 | | ||||||||| ||||| |||||||||||| || ||| || ||||||| ||| Sbjct 325365 ATATGAGGAGGATAGTGCATGTCCACCTGGACATCCTTCACCAGCGGAGGATACACCTCA 325306 Query 9850 CCGTCAATAATCT 9862 || || | || || Sbjct 325305 CCATCCACAACCT 325293 >seq5033 Length=268589 Score = 93.3 bits (102), Expect = 6e-14 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 8751 CAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGT 8810 |||| ||||| | || || || || || || ||||||| | || || || || | | Sbjct 244629 CAAATCCCACTTTCCCACCAAATGTACTAGGCATCCAGTATTCAGGAGAACAAATAGCAT 244570 Query 8811 TCGCCATGAGGCCTTTGAGGGA-AAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAG 8869 | |||||||||||||||| || | || || |||| ||| | || |||| || || Sbjct 244569 TTCCCATGAGGCCTTTGAGAGAGTAGGGGGGCTCCCATCTCTACCATAGTCTCCCCAAAC 244510 Query 8870 ATGGCGTTGGGACGGGGCTTTTCCACCAAGAA-TCCGGTGTACAACTCCACAGCCTCGAT 8928 | |||||||| | ||| || |||| |||||| || | |||| ||| || || || || Sbjct 244509 ACAGCGTTGGGTCTGGGTTTCTCCAACAAGAAGGCCAGGATACAGCTCAACTGCATCTAT 244450 Query 8929 GTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTGTTT 8978 || |||| || | | | |||||| || | ||||| |||||||||| Sbjct 244449 GTGATCGTACAGCTGCTTCATTTCGGCTGCCAGCTCCTTGTCTCCTGTTT 244400 >seq49 Length=11140812 Score = 91.5 bits (100), Expect = 2e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 8765 CCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGTTCGCCATGAGGCCT 8824 || || || || ||||| |||||||| | |||||||| || || ||||||||||| Sbjct 6446962 CCCCCAAATGTACTGGGCTTCCAGTATTCAGGGGAGCAAATAGGATTTCCCATGAGGCCT 6446903 Query 8825 TTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGG 8884 || |||||||| || ||||||| || | ||||| ||||| || || || | || Sbjct 6446902 TTTAGGGAAAATGGGGCCCCCATTTCCACCATGCTTTCACCAAATATTGCACCAGATCGT 6446843 Query 8885 GGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGTCTCCGTAAAGGGCC 8944 | ||| || | ||| | | | ||| ||||||| ||| || || || || || || || Sbjct 6446842 GTCTTCTCTAGCAAAAGAGCTGGGTAGAACTCCAGAGCATCAATATCACCATACAGTTCC 6446783 Query 8945 CTGAGTTCGGCAGCGATTTCCTTTTCTCCT 8974 ||||| ||| || || | ||||||| Sbjct 6446782 TCTAGTTCTTTAGCCATCTCTTCTTCTCCT 6446753 >seq10 Length=22665327 Score = 91.5 bits (100), Expect = 2e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 8765 CCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGTTCGCCATGAGGCCT 8824 || || || || ||||| |||||||| | |||||||| || || ||||||||||| Sbjct 18865184 CCCCCAAATGTACTGGGCTTCCAGTATTCAGGGGAGCAAATAGGATTTCCCATGAGGCCT 18865125 Query 8825 TTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGG 8884 || |||||||| || ||||||| || | ||||| ||||| || || || | || Sbjct 18865124 TTTAGGGAAAATGGGGCCCCCATTTCCACCATGCTTTCACCAAATATTGCACCAGATCGT 18865065 Query 8885 GGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGTCTCCGTAAAGGGCC 8944 | ||| || | ||| | | | ||| ||||||| ||| || || || || || || || Sbjct 18865064 GTCTTCTCTAGCAAAAGAGCTGGGTAGAACTCCAGAGCATCAATATCACCATACAGTTCC 18865005 Query 8945 CTGAGTTCGGCAGCGATTTCCTTTTCTCCT 8974 ||||| ||| || || | ||||||| Sbjct 18865004 TCTAGTTCTTTAGCCATCTCTTCTTCTCCT 18864975 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 708441743180320