Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinus_20carpio_20[refseq_20GCF_5F000951615.1_202014-11-03] 9,378 sequences; 1,713,658,011 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq10 120 3e-22 seq2784 84.2 2e-11 >seq10 Length=22665327 Score = 120 bits (132), Expect = 3e-22 Identities = 172/233 (74%), Gaps = 11/233 (5%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 ||||| || | |||| ||||| ||||| || || ||||| || | ||| || || | Sbjct 4886455 CCTCCCCTGAGACGCAGCACCAGATGCAAGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 4886396 Query 94841 ATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAG 94898 | |||| || ||| ||||||||||| || ||||||| | || ||||| || || | Sbjct 4886395 A--GTGTGCGACCATCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGG-G 4886339 Query 94899 GAATACCTTC--TTTGTCATAAATTTTTG-CCTTGACGGCGCCGACAGTGTCAGCGTGG- 94954 |||| ||||| |||||| | ||||||| |||||||| | | |||||| | ||| Sbjct 4886338 GAATGCCTTCCTTTTGTC-TGGATTTTTGTCCTTGACGTTCTCAATGGTGTCA-CTTGGC 4886281 Query 94955 TCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || |||| |||||||| || ||||| || ||||| |||||||||||||| Sbjct 4886280 TCAACCTCAAGAGTGATGGTCTTGCCAGTGAGGGTTTTGACAAAGATCTGCAT 4886228 >seq2784 Length=948819 Score = 84.2 bits (92), Expect = 2e-11 Identities = 70/86 (81%), Gaps = 11/86 (13%) Strand=Plus/Plus Query 115610 TGCTCCAGGTGAGGATCGAACTCACAACCTTGGCAT----------TATAAGTACCACGC 115659 |||||||||||||| ||||||||||||||| ||||| |||||||||| ||| Sbjct 353694 TGCTCCAGGTGAGGCTCGAACTCACAACCTCGGCATTGCACTGCTGTATAAGTACCGCGC 353753 Query 115660 GCT-GCCGATTGCGCTACTGGAGCTT 115684 ||| |||||||||| |||||||||| Sbjct 353754 GCTAACCGATTGCGCCACTGGAGCTT 353779 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448238649064080