Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinus_20carpio_20[refseq_20GCF_5F000951615.1_202014-11-03] 9,378 sequences; 1,713,658,011 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq445 100 7e-16 seq31 87.8 5e-12 >seq445 Length=552131 Score = 100 bits (110), Expect = 7e-16 Identities = 114/153 (75%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 364111 GCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATG 364170 || ||| |||| |||| ||||||||| || || |||| ||||| || |||||||| ||| Sbjct 60415 GCTCAGCAGCTGTGGTATGCCATCATTGAGTCTCAGACAGAGACTGGCACACCCTACATG 60474 Query 364171 TTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAG 364230 | ||||| ||| | ||||||||||| ||||||||| |||| || || ||| | Sbjct 60475 CTCTACAAGGATGCCTGCAACCGCAAAAGTAACCAGCAGAACCTGGGCACCATTAAATGC 60534 Query 364231 AGCAACCTATGTACCGAGATTATTGAATACACC 364263 || ||| | || || || ||| | || |||||| Sbjct 60535 AGTAACTTGTGCACAGAAATTGTAGAGTACACC 60567 >seq31 Length=24603915 Score = 87.8 bits (96), Expect = 5e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 12822 TGTTGATCCAAATGTCAGAGAATCCATGTCTTCAGTTGCTGTGGCATACGCTTTTCCTGT 12881 ||||| ||||||||||||| ||||| ||||| || ||||||||||| | || |||| Sbjct 2094100 TGTTGTTCCAAATGTCAGACCGTCCATATCTTCTGTCGCTGTGGCATAAACCTTCCCTGA 2094041 Query 12882 TTTTACATATGCAGCACATGTAGCTTCGGCCTCACATGGTGCTTGAAC 12929 ||| || |||||||| | || |||||||||||||| || | ||| Sbjct 2094040 TTTCACCAGAGCAGCACAACTCGCCTCGGCCTCACATGGAGCCTTAAC 2093993 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303196994733596