Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinus_20carpio_20[refseq_20GCF_5F000951615.1_202014-11-03] 9,378 sequences; 1,713,658,011 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq527 127 1e-24 seq2823 109 4e-19 seq30 100 2e-16 seq308 98.7 7e-16 seq36 96.9 2e-15 >seq527 Length=1699385 Score = 127 bits (140), Expect = 1e-24 Identities = 85/95 (89%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||||||||| || ||||| || |||||||| Sbjct 1256851 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGCAGGTAGGGACAGTGGGAATCTCGT 1256792 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 1256791 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 1256757 Score = 104 bits (114), Expect = 2e-17 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1269211 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTCGACTATCGGTCTCGT 1269152 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||||| Sbjct 1269151 GCCGGTATTTAGCCTTA 1269135 >seq2823 Length=178462 Score = 109 bits (120), Expect = 4e-19 Identities = 81/95 (85%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGG-----GTAATCTCGT 25956 ||||| |||||||||||||||||||| |||||||| || ||||| | |||||||| Sbjct 63426 AAGCCTGTTCCCTTGGCTGTGGTTTCACTAGATAGCAGGTAGGGACAGTAGGAATCTCGT 63485 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||| ||||||||||||||||||| Sbjct 63486 TCATCCATTCATGCGTGTCACTAATTAGATGACGA 63520 >seq30 Length=18521859 Score = 100 bits (110), Expect = 2e-16 Identities = 124/170 (73%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 6321 CCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAAAACGAG 6380 || || || | ||| || || || | || || ||||| ||||||||| || || || Sbjct 4793741 CCAACTAAGTTTTTTGGCTGTGAGTTGGGGGCGCAGACTCAGTTTGATGCTAAGAATGAC 4793682 Query 6381 CGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGACGGCTTT 6440 |||| |||||| |||||||| ||| | | ||| ||||||||| | || ||||| || Sbjct 4793681 CGCTACATCGTAAACGGATCCCATGAAGCCAACAAACTGCAGGACATGCTGGACGGATTC 4793622 Query 6441 ATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGAGCT 6490 || ||||||||||||||||| || || || ||||| || || || || Sbjct 4793621 ATCCGCAAGTTTGTGCTGTGCTCCGAGTGTGACAACCCTGAAACTGACCT 4793572 Score = 95.1 bits (104), Expect = 8e-15 Identities = 123/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 6321 CCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAAAACGAG 6380 || || || | ||| || || || | || || ||||| ||||||||| || || || Sbjct 4969721 CCAACTAAGTTTTTTGGCTGTGAGTTGGGGGCGCAGACTCAGTTTGATGCTAAGAATGAC 4969662 Query 6381 CGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGACGGCTTT 6440 |||| ||| || |||||||| ||| | | ||| ||||||||| | || ||||| || Sbjct 4969661 CGCTACATTGTAAACGGATCCCATGAAGCCAACAAACTGCAGGACATGCTGGACGGATTC 4969602 Query 6441 ATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGAGCT 6490 || ||||||||||||||||| || || || || || || ||||| || Sbjct 4969601 ATCCGCAAGTTTGTGCTGTGCTCCGAGTGTGACAATCCTGAAACCGACCT 4969552 >seq308 Length=1193138 Score = 98.7 bits (108), Expect = 7e-16 Identities = 122/167 (73%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 6321 CCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAAAACGAG 6380 || || |||| || || || || | || || ||||| ||||||||| ||| || || Sbjct 916201 CCCACCAAATTCTTTGGTTGTGAGTTGGGAGCCCAGACCCAGTTTGATGCCAAGAATGAC 916142 Query 6381 CGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGACGGCTTT 6440 |||| ||| || || ||||| ||| | | ||| ||||| ||| | || ||||| || Sbjct 916141 CGCTACATTGTCAATGGATCTCATGAGGCAAACAAACTGCAAGACATGCTAGACGGATTC 916082 Query 6441 ATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGA 6487 |||||||||||||||||||||| || || || || || || || || Sbjct 916081 ATTCGCAAGTTTGTGCTGTGTCCTGAGTGTGACAATCCTGAAACTGA 916035 Score = 95.1 bits (104), Expect = 8e-15 Identities = 121/167 (72%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 6321 CCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAAAACGAG 6380 || || |||| || || || || | || || || || ||||||||| ||| || || Sbjct 841941 CCCACCAAATTCTTTGGTTGTGAGTTGGGAGCCCAAACCCAGTTTGATACCAAGAATGAC 841882 Query 6381 CGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGACGGCTTT 6440 |||| |||||| || ||||| ||| | | ||| ||||| ||| | || || || || Sbjct 841881 CGCTACATCGTCAATGGATCTCATGAGGCAAACAAACTGCAAGACATGCTCGATGGATTC 841822 Query 6441 ATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGA 6487 |||||||||||||||||||||| || || || || || || || || Sbjct 841821 ATTCGCAAGTTTGTGCTGTGTCCTGAGTGTGACAATCCTGAAACTGA 841775 >seq36 Length=22739634 Score = 96.9 bits (106), Expect = 2e-15 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||| ||||||| ||||||||| |||||||||||||||||||||||| | Sbjct 2124438 CTCTCTTTTCAAAGTCCTTTTCATCTTTCCCTCGCGGTACTTGTTCGCTATCGGTCTCTC 2124379 Query 20007 GGTAATATTTAGCCTT 20022 | ||||||||||| Sbjct 2124378 GCCCGTATTTAGCCTT 2124363 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334908917419118