Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cyprinus_20carpio_20[refseq_20GCF_5F000951615.1_202014-11-03]
9,378 sequences; 1,713,658,011 total letters
Query= NC_008291.1
Length=198050
Score E
Sequences producing significant alignments: (Bits) Value
seq39 111 2e-19
seq40 105 8e-18
seq24 102 1e-16
seq230 96.9 4e-15
seq32 87.8 2e-12
>seq39
Length=16255708
Score = 111 bits (122), Expect = 2e-19
Identities = 106/136 (78%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 32683 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 32742
|||| ||||| || || | ||| ||||| || |||||||| ||||| || || | ||| |
Sbjct 10356358 CCTCATCTCTGCTGATAAGTTCATTGGAGAAGGTGAGTCCAGGCATGAGTCCTCTCTTCT 10356417
Query 32743 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 32802
| ||||| || || || ||||| || ||||||||||| ||||||||||| || ||||| |
Sbjct 10356418 TTAGCCAGAAAATAGAAGCAAAAGACCCAGAAAAGAAGATTCCTTCTACAGCAGCAAAAG 10356477
Query 32803 CAATAAGTCTCTCTCC 32818
| | | |||||| ||
Sbjct 10356478 CCACCACTCTCTCCCC 10356493
Score = 84.2 bits (92), Expect = 3e-11
Identities = 61/71 (86%), Gaps = 0/71 (0%)
Strand=Plus/Plus
Query 33171 GTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGA 33230
||||| || || ||||||||||| || ||||| | |||||||||||| || |||||||||
Sbjct 10357388 GTCCAGAAGGAGGCCTCTGCCTTCTTGTACATCTGCCAGATGTCATGGTACTGAATTGGA 10357447
Query 33231 AAAATAACAAA 33241
||||| |||||
Sbjct 10357448 AAAATGACAAA 10357458
>seq40
Length=23490330
Score = 105 bits (116), Expect = 8e-18
Identities = 105/136 (77%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 32683 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 32742
|||| ||||| || || | ||| ||||| || |||||||| ||||| || || | ||| |
Sbjct 14323891 CCTCATCTCTGCTGATAAGTTCATTGGAGAAGGTGAGTCCCGGCATGAGTCCTCTCTTCT 14323950
Query 32743 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 32802
| ||||| || || || ||||| || ||||||||||| |||||||| || || ||||| |
Sbjct 14323951 TTAGCCAGAAAATAGAAGCAAAAGACCCAGAAAAGAAGATTCCTTCCACAGCAGCAAAAG 14324010
Query 32803 CAATAAGTCTCTCTCC 32818
| | | |||||| ||
Sbjct 14324011 CCACCACTCTCTCCCC 14324026
Score = 86.0 bits (94), Expect = 8e-12
Identities = 82/105 (78%), Gaps = 0/105 (0%)
Strand=Plus/Plus
Query 32921 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 32980
|||||| | || || |||||||| ||||| |||||||| || || |||||||| |||||
Sbjct 14324448 ATCTTTGATGTAAGTGTCAATCAACAGACTGTACATTTCGGAGTGGATGTTTTCCATGGC 14324507
Query 32981 CATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTC 33025
|| || |||||||||||||| | || || || | || |||||
Sbjct 14324508 AATCTGGAATCCGTAGAAGCAACGGGCTTCAGTTACTTGGACTTC 14324552
>seq24
Length=12449181
Score = 102 bits (112), Expect = 1e-16
Identities = 104/136 (76%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 32683 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 32742
|||| ||||| || || | ||| ||||| | |||||||||||||| ||||| | || |
Sbjct 10123637 CCTCATCTCTGCTGATGAGTTCATTGGAGTAGGTGAGTCCGGGCATCAGGCCTCTTTTCT 10123696
Query 32743 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 32802
| | ||| | |||| |||||||||||||| ||||| || ||||| ||||| ||||| |
Sbjct 10123697 TCAACCAGTAGATGGCAGCAAATGATCCAGAGAAGAAGATGCCTTCCACTGCTGCAAATG 10123756
Query 32803 CAATAAGTCTCTCTCC 32818
| | | || ||||||
Sbjct 10123757 CTACTAATCGCTCTCC 10123772
Score = 91.5 bits (100), Expect = 2e-13
Identities = 79/98 (81%), Gaps = 0/98 (0%)
Strand=Plus/Plus
Query 33158 CACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATG 33217
||| || || |||||||| ||||| |||| || | ||| ||||| |||||||||||| |
Sbjct 10126977 CACCTCCTCAACTGTCCAGAATGAGGCCTGAGCTTGTTTGTACATTTTCCAGATGTCAGG 10127036
Query 33218 ATATTGAATTGGAAAAATAACAAATCTATTTGGATTTT 33255
||| || ||||| ||||| ||||||| ||||| ||||
Sbjct 10127037 ATACTGGATTGGGAAAATGACAAATCGCTTTGGGTTTT 10127074
>seq230
Length=1256464
Score = 96.9 bits (106), Expect = 4e-15
Identities = 125/170 (74%), Gaps = 2/170 (1%)
Strand=Plus/Minus
Query 61917 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 61976
|||| || || || ||||| || || |||||| ||| | || || || || ||||| |
Sbjct 1149257 TCCAGCCATAGAAGTGCATGCTGGTCAGTTTGCCATAGTTGGGTTCAGCGATGTGGATGT 1149198
Query 61977 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATAATCGTCT 62036
| | || || || || || ||||||||||| |||||||||||||| |||| || ||||
Sbjct 1149197 TGAGGGACTGGCTCTGGTCAATGAAGGCTCCTCTGTCTGCAGCCATCTTTAAGATGGTCT 1149138
Query 62037 TTTGTGGAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATCTTCTGG 62085
|||| | || ||||| | || ||||| | ||| ||| | || |||||
Sbjct 1149137 TTTGAGAGATCTCCCACACCGTCTTATACAGCTC-CTTCAGGTCATCTGG 1149089
>seq32
Length=26100072
Score = 87.8 bits (96), Expect = 2e-12
Identities = 81/103 (79%), Gaps = 0/103 (0%)
Strand=Plus/Plus
Query 33153 ATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATG 33212
|||| || || || |||||||| ||||| |||| || | ||| ||||| |||||||||
Sbjct 10136387 ATATTTACCTCCTCGACTGTCCAGAATGAAGCCTGAGCTTGTTTGTACATTTTCCAGATG 10136446
Query 33213 TCATGATATTGAATTGGAAAAATAACAAATCTATTTGGATTTT 33255
|| |||| ||||| |||||||| ||||||| || || ||||
Sbjct 10136447 TCGGGATACTGAATAGGAAAAATGACAAATCGCTTCGGGTTTT 10136489
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 633557722488800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |