Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinus_20carpio_20[refseq_20GCF_5F000951615.1_202014-11-03] 9,378 sequences; 1,713,658,011 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq40 87.8 2e-12 seq39 82.4 8e-11 >seq40 Length=23490330 Score = 87.8 bits (96), Expect = 2e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 93362 ATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGG 93421 ||||| || || || |||||| |||||||| || |||| || ||||| ||||| ||| Sbjct 14324455 ATGTAAGTGTCAATCAACAGACTGTACATTTCGGAGTGGATGTTTTCCATGGCAATCTGG 14324514 Query 93422 AATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTAC 93477 ||||||||||| || | ||||| || | || ||||| |||| ||||| ||| || Sbjct 14324515 AATCCGTAGAAGCAACGGGCTTCAGTTACTTGGACTTCCTGAGTAAATCGCTCCAC 14324570 >seq39 Length=16255708 Score = 82.4 bits (90), Expect = 8e-11 Identities = 80/103 (78%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 93603 CAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAATTG 93662 ||||||| || || || ||||| || |||||||| | ||| ||||| || || ||||||| Sbjct 10357386 CAGTCCAGAAGGAGGCCTCTGCCTTCTTGTACATCTGCCAGATGTCATGGTACTGAATTG 10357445 Query 93663 GAAATATGACAAAACGATTAGGGTTATCTTTTAGTAACGGCTC 93705 |||| |||||||| || | ||||| || || || | ||||| Sbjct 10357446 GAAAAATGACAAAGCGGTGGGGGTTGTCCTTCAGAAGGGGCTC 10357488 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556795521992720