Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinus_20carpio_20[refseq_20GCF_5F000951615.1_202014-11-03] 9,378 sequences; 1,713,658,011 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq6002 95.1 2e-14 seq37 95.1 2e-14 seq13 93.3 9e-14 seq7545 91.5 3e-13 seq42 91.5 3e-13 seq29 91.5 3e-13 seq22 91.5 3e-13 seq20 91.5 3e-13 seq5 91.5 3e-13 seq4955 89.7 1e-12 seq919 89.7 1e-12 seq380 89.7 1e-12 seq3 89.7 1e-12 seq2857 86.0 1e-11 seq39 86.0 1e-11 seq4 86.0 1e-11 >seq6002 Length=127950 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| ||||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 125133 GCCCGGCTAGCTCAGTCGGTAGAGCGTGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 125074 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 125073 CCCACGTTGGGC 125062 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 118471 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 118412 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 118411 CCCACGTTGGGC 118400 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 119769 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 119710 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 119709 CCCACGTTGGGC 119698 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 122300 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 122241 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 122240 CCCACGTTGGGC 122229 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 126422 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 126363 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 126362 CCCACGTTGGGC 126351 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 127709 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 127650 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 127649 CCCACGTTGGGC 127638 >seq37 Length=11248262 Score = 95.1 bits (104), Expect = 2e-14 Identities = 67/77 (87%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 9995979 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 9996038 Query 142563 CCCCACATCGGGCAGAA 142579 |||||| | |||| ||| Sbjct 9996039 CCCCACGTTGGGCGGAA 9996055 >seq13 Length=25164623 Score = 93.3 bits (102), Expect = 9e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 142502 TAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561 |||||||| |||||||||||||||||| ||||||||||||| |||||||||||||| Sbjct 761848 TAGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGA 761907 Query 142562 GCCCCACATCGGGC 142575 ||||||| | |||| Sbjct 761908 GCCCCACGTTGGGC 761921 Score = 87.8 bits (96), Expect = 4e-12 Identities = 65/75 (87%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 142053 GTCTCTGTGGCGCAATGGAC-AGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGAC 142111 ||||||||||||||||||| |||||| ||||||||||||||| ||| | ||||||||| Sbjct 8516998 GTCTCTGTGGCGCAATGGAATAGCGCGCTGGACTTCTAATCCAGAGGCTCCGGGTTCGAG 8517057 Query 142112 CCCCGCCAGAGACGC 142126 |||| |||||| || Sbjct 8517058 TCCCGGCAGAGATGC 8517072 Score = 87.8 bits (96), Expect = 4e-12 Identities = 65/75 (87%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 142053 GTCTCTGTGGCGCAATGGAC-AGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGAC 142111 ||||||||||||||||||| |||||| ||||||||||||||| ||| | ||||||||| Sbjct 8719746 GTCTCTGTGGCGCAATGGAATAGCGCGCTGGACTTCTAATCCAGAGGCTTCGGGTTCGAG 8719805 Query 142112 CCCCGCCAGAGACGC 142126 |||| |||||| || Sbjct 8719806 TCCCGACAGAGATGC 8719820 >seq7545 Length=593835 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 478705 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 478764 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 478765 CCCCACGTTGGGC 478777 >seq42 Length=13570270 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 6659381 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 6659322 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 6659321 CCCCACGTTGGGC 6659309 >seq29 Length=17515369 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 2513194 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 2513253 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 2513254 CCCCACGTTGGGC 2513266 >seq22 Length=8395091 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 2806299 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 2806240 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 2806239 CCCCACGTTGGGC 2806227 >seq20 Length=16766033 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 9731325 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 9731266 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 9731265 CCCCACGTTGGGC 9731253 >seq5 Length=20922272 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 15896524 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 15896583 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 15896584 CCCCACGTTGGGC 15896596 >seq4955 Length=65579 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 63166 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 63107 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 63106 CCCACGTTGGGC 63095 >seq919 Length=63726 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 1111 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 1170 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 1171 CCCACGTTGGGC 1182 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 2588 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 2647 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 2648 CCCACGTTGGGC 2659 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 4590 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 4531 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 4530 CCCACGTTGGGC 4519 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 6281 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 6340 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 6341 CCCACGTTGGGC 6352 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 8214 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 8273 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 8274 CCCACGTTGGGC 8285 Score = 84.2 bits (92), Expect = 4e-11 Identities = 57/64 (89%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 6860 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 6919 Query 142564 CCCA 142567 |||| Sbjct 6920 CCCA 6923 >seq380 Length=355220 Score = 89.7 bits (98), Expect = 1e-12 Identities = 97/129 (75%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 217836 CTGCACTCTCATCCTGACAGAGGGAGACTCAGCTGCCACGCTGGCAACCGCTGGTCTTGC 217895 ||||||||| ||||||||||| |||||||| || || ||||| | ||||| | Sbjct 344695 CTGCACTCTAATCCTGACAGAAGGAGACTCGGCCAAAACTCTGGCCGTGTCGGGTCTGGG 344636 Query 217896 CGTGGTGGGTCGTGAAAGGTATGGTATCTTCCCCCTCCGTGGTAAGCTGCTCAACGTGCG 217955 |||||||| ||||| | || ||| ||||||| || |||||||| ||||||| || || Sbjct 344635 TGTGGTGGGACGTGACCGCTACGGTGTCTTCCCTCTGCGTGGTAAAATGCTCAATGTTCG 344576 Query 217956 CGATGCCTC 217964 || || || Sbjct 344575 AGAGGCATC 344567 >seq3 Length=20567433 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 15924551 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 15924610 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 15924611 CCCACGTTGGGC 15924622 >seq2857 Length=1038969 Score = 86.0 bits (94), Expect = 1e-11 Identities = 63/72 (88%), Gaps = 1/72 (1%) Strand=Plus/Plus Query 142053 GTCTCTGTGGCGCAATGGAC-AGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGAC 142111 ||||||||||||||||||| |||||| ||||||||||||||| ||| | ||||||||| Sbjct 868007 GTCTCTGTGGCGCAATGGAATAGCGCGCTGGACTTCTAATCCAGAGGCTCCGGGTTCGAG 868066 Query 142112 CCCCGCCAGAGA 142123 |||| |||||| Sbjct 868067 TCCCGGCAGAGA 868078 >seq39 Length=16255708 Score = 86.0 bits (94), Expect = 1e-11 Identities = 63/72 (88%), Gaps = 1/72 (1%) Strand=Plus/Minus Query 142053 GTCTCTGTGGCGCAATGGAC-AGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGAC 142111 ||||||||||||||||||| |||||| ||||||||||||||| ||| | ||||||||| Sbjct 6882480 GTCTCTGTGGCGCAATGGAATAGCGCGCTGGACTTCTAATCCAGAGGCTCCGGGTTCGAG 6882421 Query 142112 CCCCGCCAGAGA 142123 |||| |||||| Sbjct 6882420 TCCCGGCAGAGA 6882409 >seq4 Length=11347241 Score = 86.0 bits (94), Expect = 1e-11 Identities = 63/72 (88%), Gaps = 1/72 (1%) Strand=Plus/Minus Query 142053 GTCTCTGTGGCGCAATGGAC-AGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGAC 142111 ||||||||||||||||||| |||||| ||||||||||||||| ||| | ||||||||| Sbjct 6992262 GTCTCTGTGGCGCAATGGAATAGCGCGCTGGACTTCTAATCCAGAGGCTCCGGGTTCGAG 6992203 Query 142112 CCCCGCCAGAGA 142123 |||| |||||| Sbjct 6992202 TCCCGGCAGAGA 6992191 Score = 86.0 bits (94), Expect = 1e-11 Identities = 63/72 (88%), Gaps = 1/72 (1%) Strand=Plus/Minus Query 142053 GTCTCTGTGGCGCAATGGAC-AGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGAC 142111 ||||||||||||||||||| |||||| ||||||||||||||| ||| | ||||||||| Sbjct 7143485 GTCTCTGTGGCGCAATGGAATAGCGCGCTGGACTTCTAATCCAGAGGCTCCGGGTTCGAG 7143426 Query 142112 CCCCGCCAGAGA 142123 |||| |||||| Sbjct 7143425 TCCCGGCAGAGA 7143414 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027713299626898