Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinus_20carpio_20[refseq_20GCF_5F000951615.1_202014-11-03] 9,378 sequences; 1,713,658,011 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq10 141 2e-28 >seq10 Length=22665327 Score = 141 bits (156), Expect = 2e-28 Identities = 170/229 (74%), Gaps = 3/229 (1%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| | || |||| |||| || | |||||||| || |||||||| || || || Sbjct 4886455 CCTCCCCTGAGACGCAGCACCAGATGCAAGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 4886396 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 ||||| | |||||||| | ||| || || || || || || || || ||||| || ||| Sbjct 4886395 AGTGTGCGACCATCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGG-GGA 4886337 Query 68355 ATGCCTTCC--TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTA 68412 ||||||||| |||||| || | || |||||||| ||| |||||||| || || | Sbjct 4886336 ATGCCTTCCTTTTGTCTGGATTTTTGTCCTTGACGTTCTCAATGGTGTCACTTGGCTCAA 4886277 Query 68413 CTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 | || | |||||||| || || |||||||| ||||| || |||||||| Sbjct 4886276 CCTCAAGAGTGATGGTCTTGCCAGTGAGGGTTTTGACAAAGATCTGCAT 4886228 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921514362814160