Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinus_20carpio_20[refseq_20GCF_5F000951615.1_202014-11-03] 9,378 sequences; 1,713,658,011 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq445 96.9 4e-15 seq230 86.0 7e-12 seq40 86.0 7e-12 seq24 84.2 3e-11 seq39 82.4 9e-11 >seq445 Length=552131 Score = 96.9 bits (106), Expect = 4e-15 Identities = 106/139 (76%), Gaps = 4/139 (3%) Strand=Plus/Minus Query 114499 CTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCC 114558 |||||||||| |||||||||| |||||| || ||||| || | ||||||||||| Sbjct 60579 CTCATCCTTACTGGTGTACTCTACAATTTCTGTGCACAAGTTACTGCATTTAATGGTGCC 60520 Query 114559 CAAGTTCTTTTGATTTGACTTTGT--GTTACACGCATCCTTGTAAAGCATGTATGGCGTC 114616 || ||||| || || ||||| ||| || ||||||||||| |||||||| || || Sbjct 60519 CAGGTTCTGCTGGTT--ACTTTTGCGGTTGCAGGCATCCTTGTAGAGCATGTAGGGTGTG 60462 Query 114617 CCCGTCTCCGTTTGGGACT 114635 || ||||| || || |||| Sbjct 60461 CCAGTCTCTGTCTGAGACT 60443 >seq230 Length=1256464 Score = 86.0 bits (94), Expect = 7e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 113942 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAG 114001 ||||| ||| | ||||||||||| | |||||||||| |||| ||| || || |||||| Sbjct 1148754 TAGATGTTGCTAGTGTATGGCTCGATTGACTCATTGTTTCCCAGGATCTGAGCAGTGGAG 1148695 Query 114002 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACG 114036 || |||||||| || |||| || || |||||||| Sbjct 1148694 GCAGTGGGCATAGGAGCCAGCAGCAGACTGTTACG 1148660 >seq40 Length=23490330 Score = 86.0 bits (94), Expect = 7e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 126066 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACCCCGCTTCT 126125 |||| || | | ||| |||||||| |||||| ||||| |||||||| || | ||||| Sbjct 14323891 CCTCATCTCTGCTGATAAGTTCATTGGAGAAGGTGAGTCCCGGCATGAGTCCTCTCTTCT 14323950 Query 126126 TCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACA 126175 | | ||||||||| | | ||| || || || ||||||||||| |||||| Sbjct 14323951 TTAGCCAGAAAATAGAAGCAAAAGACCCAGAAAAGAAGATTCCTTCCACA 14324000 >seq24 Length=12449181 Score = 84.2 bits (92), Expect = 3e-11 Identities = 84/109 (77%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 126066 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACCCCGCTTCT 126125 |||| || | | |||||||||||| ||| || ||||| ||||| || || | |||| Sbjct 10123637 CCTCATCTCTGCTGATGAGTTCATTGGAGTAGGTGAGTCCGGGCATCAGGCCTCTTTTCT 10123696 Query 126126 TCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCAC 126174 |||||||| | || ||| |||||| || ||||||||||| || ||||| Sbjct 10123697 TCAACCAGTAGATGGCAGCAAATGATCCAGAGAAGAAGATGCCTTCCAC 10123745 >seq39 Length=16255708 Score = 82.4 bits (90), Expect = 9e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 126066 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACCCCGCTTCT 126125 |||| || | | ||| |||||||| |||||| ||||| |||||||| || | ||||| Sbjct 10356358 CCTCATCTCTGCTGATAAGTTCATTGGAGAAGGTGAGTCCAGGCATGAGTCCTCTCTTCT 10356417 Query 126126 TCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACA 126175 | | ||||||||| | | ||| || || || ||||||||||| || ||| Sbjct 10356418 TTAGCCAGAAAATAGAAGCAAAAGACCCAGAAAAGAAGATTCCTTCTACA 10356467 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597283575224240