Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinus_20carpio_20[refseq_20GCF_5F000951615.1_202014-11-03] 9,378 sequences; 1,713,658,011 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq39 86.0 6e-12 seq10 84.2 2e-11 >seq39 Length=16255708 Score = 86.0 bits (94), Expect = 6e-12 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 52764 AATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGGGCAAGACCAACTTTTTCGAGAAG 52823 ||||| ||||| || ||| | || ||||| | |||||||||||||||||||| |||||| Sbjct 10355686 AATCCTTTTGACTTCATGGAGAATATTTCCTTGGAGGGCAAGACCAACTTTTTTGAGAAG 10355627 Query 52824 CGAGTCGGCGAGTATAAGCG 52843 ||||| |||||||| |||| Sbjct 10355626 CGAGTAGGCGAGTACCAGCG 10355607 >seq10 Length=22665327 Score = 84.2 bits (92), Expect = 2e-11 Identities = 153/219 (70%), Gaps = 5/219 (2%) Strand=Plus/Minus Query 138399 ACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGA 138458 ||||| || | ||| | | | |||||||| || ||||||||||| || || || Sbjct 4886444 ACGCAGCACCAGATGCAAGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGTGTGCGACC 4886385 Query 138459 GTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTC--T 138516 || || || ||||| || | | |||| || | ||| ||||| || || || ||||| | Sbjct 4886384 ATCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGG-GGAATGCCTTCCTT 4886326 Query 138517 TTGTCGGTGATTTTT-TGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGT 138575 ||||| | ||||||| | || | | || | |||||| | | ||| ||||| | || Sbjct 4886325 TTGTCTG-GATTTTTGTCCTTGACGTTCTCAATGGTGTCACTTGGCTCAACCTCAAGAGT 4886267 Query 138576 CAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 | || || ||||| || ||||| ||||| |||||||| Sbjct 4886266 GATGGTCTTGCCAGTGAGGGTTTTGACAAAGATCTGCAT 4886228 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496204225640160