Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinus_20carpio_20[refseq_20GCF_5F000951615.1_202014-11-03] 9,378 sequences; 1,713,658,011 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq2161 107 3e-18 seq39 107 3e-18 seq4724 89.7 7e-13 >seq2161 Length=836446 Score = 107 bits (118), Expect = 3e-18 Identities = 113/146 (77%), Gaps = 2/146 (1%) Strand=Plus/Minus Query 9545 GAAAATCATCAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTC 9604 |||| | ||||||| ||||| |||||| | || || || ||||| |||| ||| || | Sbjct 325799 GAAAGTTGTCAGGCATCAGAGGGTGCCAGTGATACAGAGTGTTGAATTCGGACGCGATGC 325740 Query 9605 GGTTCTGGTACTGAAAGGCGGT-ACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAG 9663 |||||||||||||||| ||| | || ||| || | ||| |||||||| | |||| |||| Sbjct 325739 GGTTCTGGTACTGAAA-GCGCTCACTGAAGAGAAGCTCTGGGTCAAACTTGAGCTTGAAG 325681 Query 9664 TGGTACCCGCTGAGTTGCTGGACATA 9689 ||||| ||||| | ||||| || || Sbjct 325680 TGGTAGCCGCTCAAGTGCTGAACGTA 325655 >seq39 Length=16255708 Score = 107 bits (118), Expect = 3e-18 Identities = 170/244 (70%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 8936 GCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCC 8995 || || || || || || || || || | ||| || |||||||| |||||||||||| | Sbjct 9933076 GCAGTATTGACAATCTCAAAGCCCACTTTCCCACCAAAGGTGCTCGGTTTCCAGTACTCG 9933135 Query 8996 GGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATG 9055 ||||| |||||| || |||| || ||||| | ||| | || || |||| || | Sbjct 9933136 GGGGAACAGATGGGATTTCCCATAAGTCCTTTGAGGGAGTAGGGGGCACCCATTTCCACC 9933195 Query 9056 ATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGT 9115 ||| |||| || |||||||| | | | || || || || | | |||| || || Sbjct 9933196 ATGGTCTCCCCAAAGATGGCGTTGAGCCTGGGCTTCTCAACCAGCAGCCCAGCATAAAGC 9933255 Query 9116 TCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 || ||||| || || || ||||| | |||| | || ||||| |||||||| || ||| Sbjct 9933256 TCCACAGCATCCACATCCCCATACATCTCTTCAAGTTCAGCAGCCATCTCCTTTTCTCCT 9933315 Query 9176 ACAA 9179 | || Sbjct 9933316 AAAA 9933319 Score = 89.7 bits (98), Expect = 7e-13 Identities = 166/244 (68%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 8936 GCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCC 8995 || || || || || || || || || | || || |||||||| |||||||||||| | Sbjct 10045732 GCAGTGTTGACAATCTCAAAGCCCACTTTGCCACCAAAGGTGCTTGGTTTCCAGTACTCA 10045791 Query 8996 GGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATG 9055 ||||| ||||| || |||| || ||||| | ||| | || || |||| || | Sbjct 10045792 GGGGAACAGATTGGATTTCCCATAAGTCCTTTGAGGGAGTAGGGGGCACCCATTTCCACC 10045851 Query 9056 ATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGT 9115 ||| |||| || || || || || | || || || || | || ||||| || || Sbjct 10045852 ATGGTCTCCCCAAATATTGCGTTGGTCCTGGGCTTCTCAACCAGCAACCCAGTATAAAGC 10045911 Query 9116 TCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 || ||||| || || | || || | |||| | || ||||| |||||||| || ||| Sbjct 10045912 TCCACAGCATCCACATGCCCGTACAACTCTTCAAGTTCAGCAGCCATCTCCTTTTCTCCT 10045971 Query 9176 ACAA 9179 | || Sbjct 10045972 AAAA 10045975 >seq4724 Length=9361 Score = 89.7 bits (98), Expect = 7e-13 Identities = 166/244 (68%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 8936 GCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCC 8995 || || || || || || || || || | || || |||||||| |||||||||||| | Sbjct 2927 GCAGTGTTGACAATCTCAAAGCCCACTTTGCCACCAAAGGTGCTTGGTTTCCAGTACTCA 2986 Query 8996 GGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATG 9055 ||||| ||||| || |||| || ||||| | ||| | || || |||| || | Sbjct 2987 GGGGAACAGATTGGATTTCCCATAAGTCCTTTGAGGGAGTAGGGGGCACCCATTTCCACC 3046 Query 9056 ATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGT 9115 ||| |||| || || || || || | || || || || | || ||||| || || Sbjct 3047 ATGGTCTCCCCAAATATTGCGTTGGTCCTGGGCTTCTCAACCAGCAACCCAGTATAAAGC 3106 Query 9116 TCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 || ||||| || || | || || | |||| | || ||||| |||||||| || ||| Sbjct 3107 TCCACAGCATCCACATGCCCGTACAACTCTTCAAGTTCAGCAGCCATCTCCTTTTCTCCT 3166 Query 9176 ACAA 9179 | || Sbjct 3167 AAAA 3170 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723643160985200