Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinus_20carpio_20[refseq_20GCF_5F000951615.1_202014-11-03] 9,378 sequences; 1,713,658,011 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq230 109 9e-19 >seq230 Length=1256464 Score = 109 bits (120), Expect = 9e-19 Identities = 117/152 (77%), Gaps = 2/152 (1%) Strand=Plus/Minus Query 203910 CCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGGTCGGCCATGT 203969 ||| || ||| || || | ||||||| | |||||||| |||||| || || |||| Sbjct 1149263 CCTGCTTCCAGCCATAGAAGTGCATGCTGGTCAGTTTGCCATAGTTGGGTTCAGCGATGT 1149204 Query 203970 GAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGCGGCCATATTGATA 204028 | ||||| || |||||||| ||||| ||||| ||| || | ||||| ||||| || | Sbjct 1149203 GGATGTTGAGGGACTGGCTCTGGTCAATGAA-GGCTCCTCTGTCTGCAGCCATCTTTAAG 1149145 Query 204029 ATGGTCTTCTGCGAAATCTCCCACACCGTCTT 204060 |||||||| || || ||||||||||||||||| Sbjct 1149144 ATGGTCTTTTGAGAGATCTCCCACACCGTCTT 1149113 Score = 95.1 bits (104), Expect = 2e-14 Identities = 100/132 (76%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 204196 CTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACGC 204255 |||||| ||||||||||| || | || ||| | | |||| | ||| |||| |||| | Sbjct 1148785 CTGAAACTCTCCGGACAGAACTCTGCGTGTGTAGATGTTGCTAGTGTATGGCTCGATTGA 1148726 Query 204256 CTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGGA 204315 ||| ||||| || | |||||||| ||| ||| |||||||| |||||||| ||||| Sbjct 1148725 CTCATTGTTTCCCAGGATCTGAGCAGTGGAGGCAGTGGGCATAGGAGCCAGCAGCAGACT 1148666 Query 204316 GTTGCGCACACC 204327 ||| ||||| || Sbjct 1148665 GTTACGCACTCC 1148654 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795061987931680