Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinus_20carpio_20[refseq_20GCF_5F000951615.1_202014-11-03] 9,378 sequences; 1,713,658,011 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq10 105 2e-17 >seq10 Length=22665327 Score = 105 bits (116), Expect = 2e-17 Identities = 152/212 (72%), Gaps = 3/212 (1%) Strand=Plus/Minus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 ||| || || || | || |||||||| |||| ||||||||||| || || | ||||| Sbjct 4886441 CAGCACCAGATGCAAGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGTGTGCGACCATC 4886382 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTC--TCGC 199534 ||||||||| || || || ||||| || | ||||||||| || ||| ||||| | Sbjct 4886381 TTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGG-GGAATGCCTTCCTTTTG 4886323 Query 199535 TCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATC 199594 || || | || | ||| ||| || | |||||| ||| || || || | ||||| Sbjct 4886322 TCTGGATTTTTGTCCTTGACGTTCTCAATGGTGTCACTTGGCTCAACCTCAAGAGTGATG 4886263 Query 199595 GTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || ||||| ||||| ||||| || || Sbjct 4886262 GTCTTGCCAGTGAGGGTTTTGACAAAGATCTG 4886231 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178779945938326