Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinus_20carpio_20[refseq_20GCF_5F000951615.1_202014-11-03] 9,378 sequences; 1,713,658,011 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq10 127 2e-24 seq32 82.4 8e-11 >seq10 Length=22665327 Score = 127 bits (140), Expect = 2e-24 Identities = 172/232 (74%), Gaps = 7/232 (3%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || ||||| ||||| ||||| |||||||| | || || ||| | | Sbjct 4886228 ATGCAGATCTTTGTCAAAACCCTCACTGGCAAGACCATCACTCTTGAGGTTGAGCCAAGT 4886287 Query 38304 GACAGCGTGCA-AACGCTTAAAGA-AAAAATCCTCGACAAA--GAGGGAATTCCCGCCGA 38359 |||| | | | |||| | || || |||||||| |||||| || || |||||| | || Sbjct 4886288 GACACCATTGAGAACG-TCAAGGACAAAAATCCA-GACAAAAGGAAGGCATTCCC-CTGA 4886344 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 ||| ||| |||| || | || |||||||||||||| || | ||||| || ||||| Sbjct 4886345 CCAGCAGAGGCTGATCTTTGCTGGCAAACAGCTGGAAGATGGTCGCACACTGTCTGACTA 4886404 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||||||| ||||| | || ||||| ||||||||||| | || || ||| Sbjct 4886405 CAACATCCAGAAGGAGTCCACCTTGCATCTGGTGCTGCGTCTCAGGGGAGGC 4886456 >seq32 Length=26100072 Score = 82.4 bits (90), Expect = 8e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 133167 GTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAA 133226 |||||||| |||||| | |||||||| |||||||||||||| || ||| ||||| Sbjct 10135484 GTAGGTGTTGATGAGCATGCTGTACATTTCAGAGTGTACGTTCTCTATAAGGATCTGAAA 10135543 Query 133227 GCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCT 133276 |||||| ||| | || ||||| | |||||| |||||| ||| |||| Sbjct 10135544 GCCGTAGAAGGATCGAGCCTCTGGGATCTGCACCTCTTGACTGAACCGCT 10135593 Score = 82.4 bits (90), Expect = 8e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 133396 ACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACATACTCCACATGTCCGAA 133455 ||||||||||| ||||| || || |||| |||| ||||||||| |||| ||||| | | Sbjct 10136393 ACCTCCTCGACTGTCCAGAATGAAGCCTGAGCTTGTTTGTACATTTTCCAGATGTCGGGA 10136452 Query 133456 TATTGTATGGGAAAAATCACAAACCGGCGGGGGTTTTC 133493 || || || |||||||| ||||| || |||||||| Sbjct 10136453 TACTGAATAGGAAAAATGACAAATCGCTTCGGGTTTTC 10136490 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500114167243520