Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinus_20carpio_20[refseq_20GCF_5F000951615.1_202014-11-03] 9,378 sequences; 1,713,658,011 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq14 120 2e-21 seq29 111 1e-18 seq18 109 4e-18 seq19 107 1e-17 >seq14 Length=18393167 Score = 120 bits (132), Expect = 2e-21 Identities = 138/186 (74%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 518523 CAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCAGAT 518582 |||| | |||||||| || || ||||| |||||| |||||| |||||||||||||| Sbjct 7874297 CAAAGACTGTATTGGTGGGGTTCATTGCTACTTGATTTTTGGCAGCATCTCCAATCAGCC 7874238 Query 518583 GTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAA 518642 ||||| ||||| |||| ||||| |||||| || | ||||| || ||||| |||| Sbjct 7874237 TCTCTGTGTCTGTGAATGCTACATAACTTGGAGTGGTCCTGTTACCCTGGTCATTGGCAA 7874178 Query 518643 TAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAA 518702 | ||||||||||| |||| || | || || ||||| | || || || | ||||| Sbjct 7874177 TGATTTCAACTTTGCCATGCTGAAAGACCCCCACACAGGAGTAGGTGGTCCCCAGATCAA 7874118 Query 518703 TACCAA 518708 | |||| Sbjct 7874117 TGCCAA 7874112 Score = 86.0 bits (94), Expect = 5e-11 Identities = 116/162 (72%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 517600 TTGAATAGCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTT 517659 |||| || | || |||||||| ||||||||||| ||||| | | | || |||| || Sbjct 7874935 TTGATTACCTGCTCCATATGCGACAGCTTCATCCGGATTGATGCTCTTGTTCAGTTCCTT 7874876 Query 517660 ACCATTGAAAAAATTTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAAC 517719 |||||||| || | || || | | | ||| || ||||| | ||||||||||| Sbjct 7874875 CCCATTGAAGAAGTCCTGCAGCAGCTTTTGGATCTTTGGGATACGGGTGGATCCTCCAAC 7874816 Query 517720 TAATACAATTTCATGCACCTGTGATTTATCCAGTTTTGAATC 517761 | ||||| ||||| ||||| || || |||||||| | ||| Sbjct 7874815 AAGGACAATGTCATGAACCTGAGACTTGTCCAGTTTAGCATC 7874774 >seq29 Length=17515369 Score = 111 bits (122), Expect = 1e-18 Identities = 136/186 (73%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 518523 CAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCAGAT 518582 |||| | |||||||| || || ||||| |||||| |||||| |||||||||||||| Sbjct 5890593 CAAAGACTGTATTGGTGGGGTTCATTGCTACTTGATTTTTGGCAGCATCTCCAATCAGCC 5890534 Query 518583 GTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAA 518642 ||||| ||||| |||| ||||| ||| || || | ||||| || ||||| |||| Sbjct 5890533 TCTCTGTGTCTGTGAATGCTACATAACTTGGTGTGGTCCTGTTACCCTGGTCATTGGCAA 5890474 Query 518643 TAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAA 518702 | ||||||||||| |||| || | || || || || | || || || | ||||| Sbjct 5890473 TGATTTCAACTTTGCCATGCTGAAAGACCCCCACGCAGGAGTAGGTGGTCCCCAGATCAA 5890414 Query 518703 TACCAA 518708 | |||| Sbjct 5890413 TGCCAA 5890408 Score = 104 bits (114), Expect = 2e-16 Identities = 108/142 (76%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 || || || |||||||| |||| |||||||||||||| ||||| || |||| | |||| Sbjct 5892563 TTCTTGTCCAGACCATAGGCAATGGCAGCAGCAGTTGGCTCATTGATGATTCGTAGAACA 5892504 Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284 || || |||| || | || ||||| |||||||| || | || || || || || || Sbjct 5892503 TTGAGGCCAGAGATAGTCCCAGCATCCTTAGTGGCCTGGCGCTGAGAGTCATTGAAGTAA 5892444 Query 518285 GCAGGAACAGTAATAACGGCAT 518306 ||||| || |||||||| |||| Sbjct 5892443 GCAGGTACTGTAATAACAGCAT 5892422 >seq18 Length=22437665 Score = 109 bits (120), Expect = 4e-18 Identities = 107/138 (78%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 518523 CAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCAGAT 518582 |||| | |||||||| || || ||||| |||||| |||||| |||||||||||||| Sbjct 19514103 CAAAGACTGTATTGGTGGGGTTCATTGCTACTTGATTTTTGGCAGCATCTCCAATCAGCC 19514162 Query 518583 GTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAA 518642 ||||| ||||| |||| ||||| ||| || || | ||||| || ||||| |||| Sbjct 19514163 TCTCTGTGTCTGTGAATGCTACATAACTTGGTGTGGTCCTGTTACCCTGGTCATTGGCAA 19514222 Query 518643 TAATTTCAACTTTACCAT 518660 | ||||||||||| |||| Sbjct 19514223 TGATTTCAACTTTGCCAT 19514240 >seq19 Length=7320473 Score = 107 bits (118), Expect = 1e-17 Identities = 140/191 (73%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 518523 CAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCAGAT 518582 |||| | || ||||| || || || || | || | ||| || ||||||||||||| || Sbjct 1806148 CAAAGACTGTGTTGGTGGGGTTCATGGCGACCTGGTTTTTTGCGGCATCTCCAATCA-AT 1806206 Query 518583 GT-TCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCA 518641 | || | || || || | ||||| |||||| || || || ||||| ||||| ||| Sbjct 1806207 CTCTCAGAATCGGTGAAAGCTACATAGCTTGGAGTGGTCCGGTTTCCTTGGTCATTAGCA 1806266 Query 518642 ATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCA 518701 || ||||||||||| |||| ||| | |||||||||||| | || || || | |||| Sbjct 1806267 ATGATTTCAACTTTTCCATGTTGGAAAACACCTACACAAGAGTAGGTGGTCCCGAGATCA 1806326 Query 518702 ATACCAATAGC 518712 ||||||| ||| Sbjct 1806327 ATACCAACAGC 1806337 Score = 100 bits (110), Expect = 2e-15 Identities = 136/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 518523 CAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCAGAT 518582 |||| | || ||||| || || || || | || | ||| || ||||||||||||| Sbjct 1718702 CAAAGACTGTGTTGGTGGGGTTCATGGCGACCTGGTTTTTTGCAGCATCTCCAATCAACC 1718761 Query 518583 GTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAA 518642 | || || ||||| || | ||||| ||| || || | || ||||| ||||| || | Sbjct 1718762 GCTCAGTATCTGTGAAAGCTACATAGCTTGGCGTGGTCCTGTTTCCTTGGTCATTAGCGA 1718821 Query 518643 TAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAA 518702 | ||||||||||| |||| ||| | ||||||||||| | || || || | ||||| Sbjct 1718822 TGATTTCAACTTTTCCATGTTGGAAGACACCTACACAGGAGTAGGTGGTCCCGAGATCAA 1718881 Query 518703 TACCAATAGC 518712 |||||| ||| Sbjct 1718882 TACCAACAGC 1718891 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780357032748868