Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinus_20carpio_20[refseq_20GCF_5F000951615.1_202014-11-03] 9,378 sequences; 1,713,658,011 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq19 109 7e-19 seq7832 96.9 4e-15 >seq19 Length=7320473 Score = 109 bits (120), Expect = 7e-19 Identities = 257/388 (66%), Gaps = 0/388 (0%) Strand=Plus/Plus Query 7040 GCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAA 7099 || || || || || |||||||||||||| || | || || || || || ||||| || Sbjct 1805352 GCTCCATAGGCCACAGCCTCATCGGGGTTGATGCTCTTGTTGAGCTCCTTGCCGTTGAAG 1805411 Query 7100 TAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATT 7159 || || | || | |||||||| || || || || || ||||| |||| || || Sbjct 1805412 TAGTCTTGGAGCAGCTTCTGAATTTTAGGAATGCGAGTGGAGCCACCAACCAGGACAATG 1805471 Query 7160 TCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATA 7219 || | | | | || || ||||| | || ||||| | || || || || |||| Sbjct 1805472 TCGTGGATCTGAGCCTTGTCCATCTTGGCATCACGAAGGGACTTCTCAACTGGGTCCAAG 1805531 Query 7220 CATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAG 7279 | |||||| | ||| || ||||||||||| || | ||| ||||| |||||| Sbjct 1805532 GTTCCACGGAAGAGGTCAGCGTTGAGCTCCTCAAAACGGGCCCTGGTGATGGAGGTATAG 1805591 Query 7280 AAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAAC 7339 ||||| | || || || | || || |||||||| | | || | | || |||| Sbjct 1805592 AAATCGATACCCTCATAGAGGGAGTCTATTTCAATACTGGCCTGGGTGCTGGAGGATAGG 1805651 Query 7340 GTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAA 7399 || ||||| || | ||| || || || || | ||| |||| ||| | | ||| || Sbjct 1805652 GTACGCTTCGCTCTCTCGCAGGCAGTGCGGAGACGGCGAACGGCTCTCTTGTTGTCGCTG 1805711 Query 7400 ATATCTTTCTTATGTTTACGTTTAAACT 7427 || || ||||| || || || || |||| Sbjct 1805712 ATGTCCTTCTTGTGCTTGCGCTTGAACT 1805739 >seq7832 Length=1814572 Score = 96.9 bits (106), Expect = 4e-15 Identities = 140/197 (71%), Gaps = 3/197 (2%) Strand=Plus/Minus Query 7956 CAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGAC 8015 |||| |||||||| ||||||||||||||| ||||||||| || || || ||||| || | Sbjct 1045888 CAAACACTGTGTTGTTGGGGTTCATGGCTACTTGGTTCTTGGCTGCATCTCCGATCAGTC 1045829 Query 8016 GTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTTCGATTCCCTTGGTCGTTCG 8075 ||| | || ||||| ||||| || ||||| |||| ||||| ||||| || | Sbjct 1045828 TTTC---GGTGTCTGTAAAGGCGACATAGCTGGGGGTTGTTCTGTTCCCCTGGTCATTGG 1045772 Query 8076 CAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCACGAATACGTTGTTCCTAAAT 8135 | || || || || | | || ||| || || || || || || || || |||| Sbjct 1045771 CGATGATCTCCACCTTACCATGCTGGAAGATTCCCACACAGGAGTAGGTGGTGCCCAAAT 1045712 Query 8136 CAATACCGATTGCTTGA 8152 ||||||| | |||| || Sbjct 1045711 CAATACCCACTGCTGGA 1045695 Score = 86.0 bits (94), Expect = 8e-12 Identities = 135/192 (70%), Gaps = 5/192 (3%) Strand=Plus/Minus Query 7958 AAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGT 8017 || |||||||| ||||||||||||| | ||||||||| || ||||||||||| || Sbjct 1176669 AACACTGTGTTGTTGGGGTTCATGGATACTTGGTTCTTGGCTGCGTCCCCGATCAG---- 1176614 Query 8018 TCATTA-TTTTCCGTAAACGCGACGTACGATGGGGTCGTTCGATTCCCTTGGTCGTTCGC 8076 || ||| | || || || | ||| || ||||| |||| ||||| ||||| | || Sbjct 1176613 TCTTTAGGTGTCTGTGAAAGTGACATAGCTGGGGGTTGTTCCGTTCCCCTGGTCACTGGC 1176554 Query 8077 AATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCACGAATACGTTGTTCCTAAATC 8136 ||| ||||| | | | ||| ||| || || || || | || || || ||||| Sbjct 1176553 AATGATTTCCATCTTTCCATGTTGGAAGATTCCCACACAGGAGAAGGTGGTGCCCAAATC 1176494 Query 8137 AATACCGATTGC 8148 |||||| | ||| Sbjct 1176493 AATACCCACTGC 1176482 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635058346557520