Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinus_20carpio_20[refseq_20GCF_5F000951615.1_202014-11-03] 9,378 sequences; 1,713,658,011 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq10 125 2e-23 >seq10 Length=22665327 Score = 125 bits (138), Expect = 2e-23 Identities = 168/230 (73%), Gaps = 9/230 (4%) Strand=Plus/Minus Query 194920 CTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTT 194979 ||||| | || || || || | |||||||| || || || ||||| || | || || Sbjct 4886449 CTGAGACGCAGCACCAGATGCAAGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGTGTG 4886390 Query 194980 CTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCT 195039 | |||||||| ||||| || || || ||||| || | || ||||| || ||||||||| Sbjct 4886389 CGACCATCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGG-GGAATGCCT 4886331 Query 195040 TC--TTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTT---TCCACTT 195094 || ||||||| || |||| | ||||||||||||||||||||| |||| || || | Sbjct 4886330 TCCTTTTGTCTGGATTTTTGTCCTTGACGTTCTCAATGGTGTC---ACTTGGCTCAACCT 4886274 Query 195095 CAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATTTAT 195144 |||| || | ||||| || || | ||||| || || | ||||| ||| Sbjct 4886273 CAAGAGTGATGGTCTTGCCAGTGAGGGTTTTGACAAAGATCTGCATCTAT 4886224 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109348289544926