Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinus_20carpio_20[refseq_20GCF_5F000951615.1_202014-11-03] 9,378 sequences; 1,713,658,011 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq19 113 4e-19 seq29 109 4e-18 seq14 93.3 3e-13 >seq19 Length=7320473 Score = 113 bits (124), Expect = 4e-19 Identities = 132/176 (75%), Gaps = 2/176 (1%) Strand=Plus/Minus Query 549970 AGATATAATGTCAAACAAAGTAGCTATAGGTATAGATTTAGGAACCACATATAGTTGTGT 550029 ||| | |||||| || | |||| | ||||| ||| | || ||||| || |||||| Sbjct 1806359 AGACACAATGTCCAAGGGACCAGCTGTTGGTATTGATCTCGGGACCACCTACTCTTGTGT 1806300 Query 550030 TGGTGTTTGGCAAAATGGTAAAGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTAC 550089 ||||||| ||| |||| ||||||||||| ||||| ||||| ||||| ||| | || || Sbjct 1806299 AGGTGTTTTCCAACATGGAAAAGTTGAAATCATTGCTAATGACCAAGGAAACCGGACCAC 1806240 Query 550090 TCCATCTTATGTTTCTTTCACGGAAACTGA-ACATTTAGTTGGTGATGCAGCAAAA 550144 |||| ||||| ||||||| || |||| | ||| | |||| ||||| |||||| Sbjct 1806239 TCCAAGCTATGTAGCTTTCACCGATTCTGAGAGATTGA-TTGGAGATGCCGCAAAA 1806185 Score = 102 bits (112), Expect = 7e-16 Identities = 115/154 (75%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 549991 AGCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAA 550050 |||| | ||||| ||| | || ||||| || ||||| ||||| | ||| |||| || Sbjct 1718892 AGCTGTTGGTATTGATCTCGGGACCACCTACTCCTGTGTAGGTGTCTTCCAACATGGAAA 1718833 Query 550051 AGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCAC 550110 ||||||||| || || ||||| ||||| ||||| || || ||| ||||| ||||||| Sbjct 1718832 AGTTGAAATCATCGCTAATGACCAAGGAAACAGGACCACGCCAAGCTATGTAGCTTTCAC 1718773 Query 550111 GGAAACTGAACATTTAGTTGGTGATGCAGCAAAA 550144 || ||||| | || |||| ||||| |||||| Sbjct 1718772 AGATACTGAGCGGTTGATTGGAGATGCTGCAAAA 1718739 >seq29 Length=17515369 Score = 109 bits (120), Expect = 4e-18 Identities = 110/143 (77%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 550394 ACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAA 550453 ||| |||| || || || ||||| || || || |||||||| || || || || ||||| Sbjct 5892418 ACGAATGCTGTTATTACAGTACCTGCTTACTTCAATGACTCTCAGCGCCAGGCCACTAAG 5892477 Query 550454 GATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCT 550513 |||||||| ||| |||| || |||||||| || || |||||||| || ||||||||| Sbjct 5892478 GATGCTGGGACTATCTCTGGCCTCAATGTTCTACGAATCATCAATGAGCCAACTGCTGCT 5892537 Query 550514 GCACTTGCATATGGACTTGATAA 550536 || |||| ||||| || || || Sbjct 5892538 GCCATTGCCTATGGTCTGGACAA 5892560 >seq14 Length=18393167 Score = 93.3 bits (102), Expect = 3e-13 Identities = 146/207 (71%), Gaps = 4/207 (2%) Strand=Plus/Plus Query 549977 ATGTCAAACAAAGTAGCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTT 550036 |||||||| | ||| | || || ||| | || ||||| || ||||| || || Sbjct 7874093 ATGTCAAAGGGACCAGCAGTTGGCATTGATCTGGGGACCACCTACTCCTGTGTGGGGGTC 7874152 Query 550037 TGGCAAAATGGTAAAGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCT 550096 | || |||| ||||||||||| ||||||||||| || |||||||| || |||||| | Sbjct 7874153 TTTCAGCATGGCAAAGTTGAAATCATTGCCAATGACCAGGGTAACAGGACCACTCCAAGT 7874212 Query 550097 TATGTTTCTTTCACGGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAG--CCA 550154 ||||| | ||||| || || || | |||| ||||| || ||| |||||| || Sbjct 7874213 TATGTAGCATTCACAGACACAGAGAGGCTGATTGGAGATGCTGCCAAAAATCAAGTAGCA 7874272 Query 550155 CTGGTAATCCTACCAATACTATTTTTG 550181 || || || |||||||| | |||| Sbjct 7874273 ATG--AACCCCACCAATACAGTCTTTG 7874297 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4028800049065220