Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinus_20carpio_20[refseq_20GCF_5F000951615.1_202014-11-03] 9,378 sequences; 1,713,658,011 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq14 127 2e-24 seq22 91.5 1e-13 >seq14 Length=18393167 Score = 127 bits (140), Expect = 2e-24 Identities = 131/169 (78%), Gaps = 2/169 (1%) Strand=Plus/Minus Query 30150 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30209 |||||| |||| || ||||| || ||||||||||| || || ||||| || ||||| || Sbjct 18375993 CATGTCTTTGTATTCAGCTCCAAAGTGCCTCCACTGAAAGCCATACACGGGACCCAGATC 18375934 Query 30210 TCCCTCTTCCCTGT-GCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGT 30268 ||| || || | | ||| ||||| ||||| |||| ||| || ||||| ||||| || | Sbjct 18375933 TCCTTCCTCACGATCGCTA-AAGCCGCTCTTATCCAGAAACTCCCTGGAGCCGTTAGCAT 18375875 Query 30269 CCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 30317 |||||||| | || ||||||||||| |||||| ||| || || || || Sbjct 18375874 CCCAGATCCTCACACCCTTCTCGGACAGCTCTCTGGCATTGGTTGAACC 18375826 >seq22 Length=8395091 Score = 91.5 bits (100), Expect = 1e-13 Identities = 130/177 (73%), Gaps = 11/177 (6%) Strand=Plus/Plus Query 30151 ATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCT 30210 ||||| |||| || ||||| || ||||||||||| || || ||||| || ||||| ||| Sbjct 3279590 ATGTCTTTGTATTCAGCTCCAAAGTGCCTCCACTGAAAGCCATACACGGGACCCAGATCT 3279649 Query 30211 CCCTCTTCCCTGT-GCTCGAAGCCCCTCTT-GTC-----CAAAAAGTCTCTGGAACCGTT 30263 || || || | | ||| |||| ||||| ||| | ||| || ||||| || || Sbjct 3279650 CCTTCCTCTCGATCGCT-ATAGCCTCTCTTAGTCTCTTATAGAAACTCCCTGGAGCCATT 3279708 Query 30264 GGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTG--TGGACCCT 30318 || ||||||||| | || | ||||||||| |||||| || ||||| || ||||| Sbjct 3279709 AGCATCCCAGATCCTCACACTCTTCTCGGACAGCTCTCAGG-GTTTGGTTGAACCCT 3279764 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408570897306794