Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinus_20carpio_20[refseq_20GCF_5F000951615.1_202014-11-03] 9,378 sequences; 1,713,658,011 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq230 91.5 3e-13 seq24 87.8 3e-12 seq445 84.2 4e-11 >seq230 Length=1256464 Score = 91.5 bits (100), Expect = 3e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 221122 CACTTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGGTTCGAT 221181 ||| || || ||||| || || || || | ||| | ||| |||| | || ||||| Sbjct 1148788 CACCTGAAACTCTCCGGACAGAACTCTGCGTGTGTAGATGTTGCTAGTGTATGGCTCGAT 1148729 Query 221182 GCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCACCAGCAG 221241 ||| ||||| |||||||||||||| ||| ||| |||||||| || |||| |||||| Sbjct 1148728 TGACTCATTGTTTCCCAGGATCTGAGCAGTGGAGGCAGTGGGCATAGGAGCCAGCAGCAG 1148669 Query 221242 ACTGTTGCGCAGTCC 221256 |||||| |||| ||| Sbjct 1148668 ACTGTTACGCACTCC 1148654 >seq24 Length=12449181 Score = 87.8 bits (96), Expect = 3e-12 Identities = 105/140 (75%), Gaps = 2/140 (1%) Strand=Plus/Minus Query 25870 TTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTT 25929 || || ||||| | ||||| ||||| || ||||| |||||||| ||| || || ||| Sbjct 10123775 TTAGGAGAGCGATTAGTAGCATTTGCAGCAGTGGAAGGCATCTTCTTCTCTGGATCATTT 10123716 Query 25930 GCGGCCATCTTCTGGCTCAAGCAGAAGGGGACC-ATGCCCGGGCTGTACTTTTCCAACGA 25988 || ||||||| |||| | ||| | ||| || | |||||||| || || ||||| || Sbjct 10123715 GCTGCCATCTACTGGTTGAAGAA-AAGAGGCCTGATGCCCGGACTCACCTACTCCAATGA 10123657 Query 25989 GCTCATCAGCAGGGACGAGG 26008 ||||||||||| || |||| Sbjct 10123656 ACTCATCAGCAGAGATGAGG 10123637 >seq445 Length=552131 Score = 84.2 bits (92), Expect = 4e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 221732 ACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTTGCTGCACTTGATGGTC 221791 ||||| ||||| |||| |||| || || ||||| || | ||| ||||| || ||||| Sbjct 60581 ACCTCATCCTTACTGGTGTACTCTACAATTTCTGTGCACAAGTTACTGCATTTAATGGTG 60522 Query 221792 CCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTAGAGCATAAAGGGACCG 221851 ||||||| | || ||| ||||| ||| || |||||||||||||| |||| | Sbjct 60521 CCCAGGTTCTGCTGGTTACTTTTGCGGTTGCAGGCATCCTTGTAGAGCATGTAGGGTGTG 60462 Query 221852 CCAGTCTCCAGCTGAG 221867 |||||||| ||||| Sbjct 60461 CCAGTCTCTGTCTGAG 60446 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928735916168320