Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinus_20carpio_20[refseq_20GCF_5F000951615.1_202014-11-03] 9,378 sequences; 1,713,658,011 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq19 102 5e-16 seq29 95.1 8e-14 seq14 95.1 8e-14 seq18 87.8 1e-11 >seq19 Length=7320473 Score = 102 bits (112), Expect = 5e-16 Identities = 112/149 (75%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 474333 TTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAAGTAG 474392 ||||||||||| | || || || ||| ||||||| ||| | ||| |||| ||||| | Sbjct 1718887 TTGGTATTGATCTCGGGACCACCTACTCCTGTGTAGGTGTCTTCCAACATGGAAAAGTTG 1718828 Query 474393 AAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAAA 474452 |||| || || ||||||||||| || || || || ||| ||||| |||| || || | Sbjct 1718827 AAATCATCGCTAATGACCAAGGAAACAGGACCACGCCAAGCTATGTAGCTTTCACAGATA 1718768 Query 474453 CTGAACATCTTATTGGAGATGCTGCTAAA 474481 |||| | | |||||||||||||| ||| Sbjct 1718767 CTGAGCGGTTGATTGGAGATGCTGCAAAA 1718739 Score = 102 bits (112), Expect = 5e-16 Identities = 114/150 (76%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 474333 TTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAAGTAG 474392 ||||||||||| | || || || ||| |||||||| ||||| ||| |||| ||||| | Sbjct 1806333 TTGGTATTGATCTCGGGACCACCTACTCTTGTGTAGGTGTTTTCCAACATGGAAAAGTTG 1806274 Query 474393 AAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAAA 474452 |||| ||||| ||||||||||| || | || || ||| ||||| |||| || || Sbjct 1806273 AAATCATTGCTAATGACCAAGGAAACCGGACCACTCCAAGCTATGTAGCTTTCACCGATT 1806214 Query 474453 CTGA-ACATCTTATTGGAGATGCTGCTAAA 474481 |||| | || | ||||||||||| || ||| Sbjct 1806213 CTGAGAGAT-TGATTGGAGATGCCGCAAAA 1806185 >seq29 Length=17515369 Score = 95.1 bits (104), Expect = 8e-14 Identities = 117/160 (73%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 474329 GCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAA 474388 ||| |||| |||||| | || || || ||| || || | || | || |||| ||| Sbjct 5890404 GCAGTTGGCATTGATCTGGGGACCACCTACTCCTGCGTGGGGGTCTTTCAGCATGGCAAA 5890463 Query 474389 GTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACT 474448 || ||||| |||||||||||||| ||||| || || |||||| ||||| | || || Sbjct 5890464 GTTGAAATCATTGCCAATGACCAGGGTAACAGGACCACACCAAGTTATGTAGCATTCACA 5890523 Query 474449 GAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAG 474488 || || || || |||||||||||||| ||| |||||| Sbjct 5890524 GACACAGAGAGGCTGATTGGAGATGCTGCCAAAAATCAAG 5890563 >seq14 Length=18393167 Score = 95.1 bits (104), Expect = 8e-14 Identities = 117/160 (73%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 474329 GCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAA 474388 ||| |||| |||||| | || || || ||| ||||| | || | || |||| ||| Sbjct 7874108 GCAGTTGGCATTGATCTGGGGACCACCTACTCCTGTGTGGGGGTCTTTCAGCATGGCAAA 7874167 Query 474389 GTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACT 474448 || ||||| |||||||||||||| ||||| || || || ||| ||||| | || || Sbjct 7874168 GTTGAAATCATTGCCAATGACCAGGGTAACAGGACCACTCCAAGTTATGTAGCATTCACA 7874227 Query 474449 GAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAG 474488 || || || || |||||||||||||| ||| |||||| Sbjct 7874228 GACACAGAGAGGCTGATTGGAGATGCTGCCAAAAATCAAG 7874267 >seq18 Length=22437665 Score = 87.8 bits (96), Expect = 1e-11 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 474381 ATGGTAAAGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTT 474440 |||| ||||| ||||| |||||||||||||| ||||| || || |||||| ||||| Sbjct 19514240 ATGGCAAAGTTGAAATCATTGCCAATGACCAGGGTAACAGGACCACACCAAGTTATGTAG 19514181 Query 474441 CTTTTACTGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAG 474488 | || || || || || || |||||||||||||| ||| |||||| Sbjct 19514180 CATTCACAGACACAGAGAGGCTGATTGGAGATGCTGCCAAAAATCAAG 19514133 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3267776932077944