Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinus_20carpio_20[refseq_20GCF_5F000951615.1_202014-11-03] 9,378 sequences; 1,713,658,011 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq445 100 3e-16 seq40 82.4 9e-11 >seq445 Length=552131 Score = 100 bits (110), Expect = 3e-16 Identities = 103/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 75896 TCACAGACGGAGACTGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGT 75955 || ||||| |||||||| ||||| || ||||| ||||||||||| || ||| || ||| Sbjct 60445 TCTCAGACAGAGACTGGCACACCCTACATGCTCTACAAGGATGCCTGCAACCGCAAAAGT 60504 Query 75956 AACCAAAAGAATTTGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTAC 76015 ||||| |||| |||| || || || || || | ||||| |||||| |||||||| Sbjct 60505 AACCAGCAGAACCTGGGCACCATTAAATGCAGTAACTTGTGCACAGAAATTGTAGAGTAC 60564 Query 76016 ACAGATAAGGATGAG 76030 || |||||||||| Sbjct 60565 ACCAGTAAGGATGAG 60579 >seq40 Length=23490330 Score = 82.4 bits (90), Expect = 9e-11 Identities = 93/122 (76%), Gaps = 2/122 (2%) Strand=Plus/Minus Query 65089 GCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCG-CTATTTATTGGTT 65147 || ||||| |||||| || |||||||| || ||||| || ||| |||||| ||| | Sbjct 14324011 GCTTTTGCTGCTGTGGAAGGAATCTTCTTTTCTGGGTCTTT-TGCTTCTATTTTCTGGCT 14323953 Query 65148 GAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTTCCCGAGATGA 65207 |||||| | || |||||||| || || |||||| ||||||||||| | ||||||| Sbjct 14323952 AAAGAAGAGAGGACTCATGCCGGGACTCACCTTCTCCAATGAACTTATCAGCAGAGATGA 14323893 Query 65208 GG 65209 || Sbjct 14323892 GG 14323891 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596499667128640