Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinus_20carpio_20[refseq_20GCF_5F000951615.1_202014-11-03] 9,378 sequences; 1,713,658,011 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq10 150 2e-31 seq6 147 3e-30 seq5669 141 1e-28 seq14 125 9e-24 seq19 120 4e-22 seq29 116 5e-21 seq7832 89.7 7e-13 >seq10 Length=22665327 Score = 150 bits (166), Expect = 2e-31 Identities = 154/199 (77%), Gaps = 3/199 (2%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| |||||||| |||||||| ||||| || || ||||| || ||||||||| | Sbjct 4886228 ATGCAGATCTTTGTCAAAACCCTCACTGGCAAGACCATCACTCTTGAGGTTGAGCCAAGT 4886287 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAA--GGAAGGCATTCCACCCGATC 171979 ||||| || || ||| |||| | ||| | || ||| || |||||||||||| || || | Sbjct 4886288 GACACCATTGAGAACGTCAAGGACAAAAATCCAGACAAAAGGAAGGCATTCC-CCTGACC 4886346 Query 171980 AGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACA 172039 |||| | || || |||||||| |||||||| |||||||| || || || |||| |||| Sbjct 4886347 AGCAGAGGCTGATCTTTGCTGGCAAACAGCTGGAAGATGGTCGCACACTGTCTGACTACA 4886406 Query 172040 ACGTTCAAAAGGAGTCTAC 172058 || | || |||||||| || Sbjct 4886407 ACATCCAGAAGGAGTCCAC 4886425 Score = 84.2 bits (92), Expect = 3e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| |||||||||||||| || || || || || |||||||||||||| ||| | Sbjct 4903200 ATGCAGATCTTTGTGAAAACTCTGACCGGTAAGACCATCACCCTCGAGGTCGAGCCCAGC 4903259 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGG 171965 ||||| ||||| || | || |||||||| || || ||||| || Sbjct 4903260 GACACCATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGG 4903303 >seq6 Length=19716050 Score = 147 bits (162), Expect = 3e-30 Identities = 337/505 (67%), Gaps = 2/505 (0%) Strand=Plus/Plus Query 196373 ATCAACCCGGATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGGCTGCTATTCTCTCAGGT 196432 ||||| || || || ||||| ||||| ||||| || ||||| || || || ||| || Sbjct 3376149 ATCAATCCAGACGAGGCAGTGGCTTACGGTGCTGCGGTTCAAGCCGCCATCCTCATGGGA 3376208 Query 196433 GTTGACAA-TAATAACGTCCAAGATCTTCTGCTACTTGATGTTGCACCCGTATCCCTGGG 196491 | ||| | |||||||| || || ||||| || ||||| || || | |||||||| Sbjct 3376209 GAC-ACATCTGGAAACGTCCAGGACCTGCTGCTGCTGGATGTGGCTCCACTGTCCCTGGG 3376267 Query 196492 TCTTGAAACAGCGGGTGGTGTTATGACTAAAATTATTGATAGGAACACAACTATTCCGAC 196551 | ||||||| || ||||| || ||||| | || | | ||||| || || || || Sbjct 3376268 TATTGAAACCGCAGGTGGAGTCATGACGGCCCTCATCAAACGCAACACCACCATCCCCAC 3376327 Query 196552 TAAGAAGGAACAAGTCTTTTCAACGTATTCCGATAATCAACCAGGTGTTCATATTCAAGT 196611 || || || ||| | || || || || || || || ||||| | || || || Sbjct 3376328 CAAACAGACCCAGACCTTCACCACCTACTCAGACAACCAGCCCGGTGTCCTGATCCAGGT 3376387 Query 196612 ATATGAAGGAGAACGCTCCCGTGCAAAGGATAACCATCTACTTGGAACTTTCGATTTGAC 196671 ||||| ||||| | || |||| || ||| | || || || | || || |||| Sbjct 3376388 CTATGAGGGAGAGAGGGCCATGACAAAAGACAACAACCTGCTGGGTAAATTTGAGCTGAC 3376447 Query 196672 GGGGATTCCAGCTGCACCCAGAGGTGTTCCACAGATTAATGTTTGCTTCGATATAGACGC 196731 || || ||| |||| || | || || || ||||| | || ||| || || || || Sbjct 3376448 AGGAATCCCACCTGCTCCACGTGGAGTCCCGCAGATCGAAGTGACCTTTGACATCGATGC 3376507 Query 196732 AAATGGAATTCTAAACGTCACAGCTGAGGACAAGGCTTCTGGCAAATCTGAAAAGATTGT 196791 || ||||| ||||| || | || | |||||| |||| ||| | ||||| Sbjct 3376508 CAACGGAATCCTAAATGTGTCCGCGGTGGACAAAAGCACTGGAAAAGAGAACAAGATCAC 3376567 Query 196792 GATTACCAATGACAAGGGGCGGCTTTCTAAGGAGGAAATTGAACGTATGGTTCAAGATGC 196851 || |||||||||||||| | || ||| ||||| ||||| | ||||| || || || Sbjct 3376568 CATCACCAATGACAAGGGCAGACTGAGTAAAGAGGAGATTGAGAGGATGGTGCAGGACGC 3376627 Query 196852 GGAAAAGTACAGGGAAGAAGACGAG 196876 || || |||| | ||||| ||| Sbjct 3376628 AGACAAATACAAAGCTGAAGATGAG 3376652 Score = 134 bits (148), Expect = 2e-26 Identities = 292/436 (67%), Gaps = 1/436 (0%) Strand=Plus/Minus Query 196445 AACGTCCAAGATCTTCTGCTACTTGATGTTGCACCCGTATCCCTGGGTCTTGAAACAGCG 196504 || |||||||| | |||| || |||||||| || ||||| |||| | || || || Sbjct 3371025 AATGTCCAAGACTTGTTGCTTCTGGATGTTGCGCCACTATCCTTGGGCATCGAGACGGCA 3370966 Query 196505 GGTGGTGTTATGACTAAAATTATTGATAGGAACACAACTATTCCGACTAAGAAGGAACAA 196564 ||||| || ||||| | | || | | ||||| || || || || || || || Sbjct 3370965 GGTGGAGTCATGACACCACTGATCAAACGCAACACCACCATCCCCACCAAACAGACCCAG 3370906 Query 196565 GTCTTTTCAACGTATTCCGATAATCAACCAGGTGTTCATATTCAAGTATATGAAGGAGAA 196624 ||| | || || || || || || || ||||| | ||||| || ||||| ||||| Sbjct 3370905 ACCTTCACCACCTACTCAGACAACCAGCCCGGTGTCCTGATTCAGGTCTATGAGGGAGAG 3370846 Query 196625 CGCTCCCGTGCAAAGGATAACCATCTACTTGGAACTTTCGATTTGACGGGGATTCCAGCT 196684 | || |||| || ||| | || || || | || || |||| || || ||| || Sbjct 3370845 AGGGCCATGACAAAAGACAACAACCTGCTGGGTAAATTTGAGCTGACAGGAATCCCACCT 3370786 Query 196685 GCACCCAGAGGTGTTCCACAGATTAATGTTTGCTTCGATATAGACGCAAATGGAATTCTA 196744 ||||| | || || |||||||| | || ||| || || || || |||||||| ||| Sbjct 3370785 GCACCACGTGGAGTCCCACAGATCGAAGTGACCTTTGACATCGATGCCAATGGAATCCTA 3370726 Query 196745 AACGTCACAGCTGAGGACAAGGCTTCTGGCAAATCTGAAAAGATTGTGATTACCAATGAC 196804 || || | || | |||||| |||| ||| | ||||| || ||||||||| Sbjct 3370725 AATGTGTCCGCGGTGGACAAAAGCACTGGAAAAGAGAACAAGATCACCATCACCAATGAC 3370666 Query 196805 AAGGGGCGGCTTTCTAAGGAGGAAATTGAACGTATGGTTCAAGATGCGGAAAAGTAC-AG 196863 ||||| | || ||| ||||| ||||| | ||||| || || || || || ||| | Sbjct 3370665 AAGGGCAGACTGAGTAAAGAGGAGATTGAGAGGATGGTGCAGGACGCAGACAAATACAAA 3370606 Query 196864 GGAAGAAGACGAGGTA 196879 | |||||| ||| || Sbjct 3370605 GCTAGAAGATGAGCTA 3370590 >seq5669 Length=1486702 Score = 141 bits (156), Expect = 1e-28 Identities = 324/485 (67%), Gaps = 2/485 (0%) Strand=Plus/Minus Query 196392 TTGCTTATGGTGCGGCCGTTCAGGCTGCTATTCTCTCAGGTGTTGACAA-TAATAACGTC 196450 || |||||||||| || ||||| || || || ||| || | ||| | |||||| Sbjct 1183928 TTCCTTATGGTGCTGCGGTTCAAGCCGCCATCCTCATGGGAGAC-ACATCTGGAAACGTC 1183870 Query 196451 CAAGATCTTCTGCTACTTGATGTTGCACCCGTATCCCTGGGTCTTGAAACAGCGGGTGGT 196510 || || || ||||| || ||||| || || | ||||||||| ||||||| || ||||| Sbjct 1183869 CAGGACCTGCTGCTGCTGGATGTGGCTCCACTGTCCCTGGGTATTGAAACCGCAGGTGGA 1183810 Query 196511 GTTATGACTAAAATTATTGATAGGAACACAACTATTCCGACTAAGAAGGAACAAGTCTTT 196570 || ||||| | || | | ||||| || || || || || || || ||| Sbjct 1183809 GTCATGACGCCCCTCATCAAACGCAACACCACCATCCCCACCAAACAGACCCAGACCTTC 1183750 Query 196571 TCAACGTATTCCGATAATCAACCAGGTGTTCATATTCAAGTATATGAAGGAGAACGCTCC 196630 | || || || || || || || ||||| | || || || ||||| ||||| | || Sbjct 1183749 ACCACCTACTCAGACAACCAGCCCGGTGTCCTGATCCAGGTCTATGAGGGAGAGAGGGCC 1183690 Query 196631 CGTGCAAAGGATAACCATCTACTTGGAACTTTCGATTTGACGGGGATTCCAGCTGCACCC 196690 |||| || ||| | || || || | || || |||| || || ||| |||| || Sbjct 1183689 ATGACAAAAGACAACAACCTGCTGGGTAAATTTGAGCTGACAGGAATCCCACCTGCTCCA 1183630 Query 196691 AGAGGTGTTCCACAGATTAATGTTTGCTTCGATATAGACGCAAATGGAATTCTAAACGTC 196750 | || || || ||||| | || ||| || || || || || ||||| ||||| || Sbjct 1183629 CGTGGAGTCCCGCAGATCGAAGTGACCTTTGACATCGATGCCAACGGAATCCTAAATGTG 1183570 Query 196751 ACAGCTGAGGACAAGGCTTCTGGCAAATCTGAAAAGATTGTGATTACCAATGACAAGGGG 196810 | || | |||||| |||| ||| | ||||| || |||||||||||||| Sbjct 1183569 TCCGCGGTGGACAAAAGCACTGGAAAAGAGAACAAGATCACCATCACCAATGACAAGGGC 1183510 Query 196811 CGGCTTTCTAAGGAGGAAATTGAACGTATGGTTCAAGATGCGGAAAAGTACAGGGAAGAA 196870 | || ||| ||||| ||||| | ||||| || ||||| || || |||| | ||| Sbjct 1183509 AGACTGAGTAAAGAGGAGATTGAGAGGATGGTGCAGGATGCAGACAAATACAAAGCTGAA 1183450 Query 196871 GACGA 196875 ||||| Sbjct 1183449 GACGA 1183445 >seq14 Length=18393167 Score = 125 bits (138), Expect = 9e-24 Identities = 163/224 (73%), Gaps = 6/224 (3%) Strand=Plus/Plus Query 196184 GCACGTTTTGAAGAGTTAAACTCTGATTTGTT---TAGGAAGTGTATGGAACCTGTTGAA 196240 || |||||||||||| | || | ||| | || | | | || |||| || || || Sbjct 7874705 GCTCGTTTTGAAGAGCTCAATGCCGATCTCTTCCGTGGCACGT---TGGATCCGGTCGAG 7874761 Query 196241 CAAGTACTTCGTGACGCAAAGATGGATAAGTCTAAGGTTGATGAAATTGTCCTTGTGGGA 196300 || |||||||| || || |||| |||||| ||||| |||| ||||||||||| ||| Sbjct 7874762 AAATCCCTTCGTGATGCTAAACTGGACAAGTCTCAGGTTCATGACATTGTCCTTGTTGGA 7874821 Query 196301 GGATCAACCCGTATTCCGAAGATTCAACAGATGCTTTCTAGCTTCTTCAATAATAAAGAT 196360 ||||| |||||||| || ||||| ||| || |||| |||||||||| || || Sbjct 7874822 GGATCCACCCGTATCCCAAAGATCCAAAAGCTGCTGCAGGACTTCTTCAATGGGAAGGAA 7874881 Query 196361 TTAAACAAAACGATCAACCCGGATGAAGCAGTTGCTTATGGTGC 196404 | ||||| | ||||| ||||||||||| || || ||||| || Sbjct 7874882 CTGAACAAGAGCATCAATCCGGATGAAGCTGTCGCATATGGAGC 7874925 >seq19 Length=7320473 Score = 120 bits (132), Expect = 4e-22 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 195298 AGCTATTGGTATCGATTTAGGAACTACTTACTCATGTGTTGGTGTATGGCAAAATGATCG 195357 |||| ||||||| ||| | || || || ||||| ||||| ||||| | ||| ||| Sbjct 1718892 AGCTGTTGGTATTGATCTCGGGACCACCTACTCCTGTGTAGGTGTCTTCCAACATGGAAA 1718833 Query 195358 TGTAGAGATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTAC 195417 || || || ||| | ||||||||||||||| | || || ||| || || || || || Sbjct 1718832 AGTTGAAATCATCGCTAATGACCAAGGAAACAGGACCACGCCAAGCTATGTAGCTTTCAC 1718773 Query 195418 AGATAATGAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCAA 195477 ||||| ||| || | |||||||||| |||||||| ||| || |||||||| | ||| Sbjct 1718772 AGATACTGAGCGGTTGATTGGAGATGCTGCAAAAAACCAGGTCGCCATGAACCCCACCAA 1718713 Query 195478 TACTGTCTTTG 195488 || ||||||| Sbjct 1718712 CACAGTCTTTG 1718702 Score = 114 bits (126), Expect = 2e-20 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 195298 AGCTATTGGTATCGATTTAGGAACTACTTACTCATGTGTTGGTGTATGGCAAAATGATCG 195357 |||| ||||||| ||| | || || || ||||| ||||| ||||| | ||| ||| Sbjct 1806338 AGCTGTTGGTATTGATCTCGGGACCACCTACTCTTGTGTAGGTGTTTTCCAACATGGAAA 1806279 Query 195358 TGTAGAGATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTAC 195417 || || || || | ||||||||||||||||| || |||||| || || || || || Sbjct 1806278 AGTTGAAATCATTGCTAATGACCAAGGAAACCGGACCACTCCAAGCTATGTAGCTTTCAC 1806219 Query 195418 AGATAATGAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCAA 195477 ||| ||| | | ||||||||||||||||||| ||| || |||||||| | ||| Sbjct 1806218 CGATTCTGAGAGATTGATTGGAGATGCCGCAAAAAACCAGGTCGCCATGAACCCCACCAA 1806159 Query 195478 TACTGTCTTTG 195488 || ||||||| Sbjct 1806158 CACAGTCTTTG 1806148 >seq29 Length=17515369 Score = 116 bits (128), Expect = 5e-21 Identities = 111/142 (78%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 195708 ATGCAGTTGTGACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACG 195767 |||| ||| | || |||||||||||||||| ||| || || || ||||| || ||||| | Sbjct 5892422 ATGCTGTTATTACAGTACCTGCTTACTTCAATGACTCTCAGCGCCAGGCCACTAAGGATG 5892481 Query 195768 CTGCTGCTATTGCGGGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAA 195827 ||| |||| | || || || ||| |||| |||||||| ||||| || ||||| | Sbjct 5892482 CTGGGACTATCTCTGGCCTCAATGTTCTACGAATCATCAATGAGCCAACTGCTGCTGCCA 5892541 Query 195828 TTGCTTATGGTCTGGACAAGAA 195849 |||| ||||||||||||||||| Sbjct 5892542 TTGCCTATGGTCTGGACAAGAA 5892563 >seq7832 Length=1814572 Score = 89.7 bits (98), Expect = 7e-13 Identities = 130/184 (71%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 195305 GGTATCGATTTAGGAACTACTTACTCATGTGTTGGTGTATGGCAAAATGATCGTGTAGAG 195364 ||||| ||||| || || || ||||| ||||| || | | || ||| | || ||| Sbjct 1045705 GGTATTGATTTGGGCACCACCTACTCCTGTGTGGGAATCTTCCAGCATGGTAAGGTGGAG 1045764 Query 195365 ATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTACAGATAAT 195424 || ||| | |||||||| || ||| | ||||| || || || ||||||||||| | Sbjct 1045765 ATCATCGCCAATGACCAGGGGAACAGAACAACCCCCAGCTATGTCGCCTTTACAGACACC 1045824 Query 195425 GAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCAATACTGTC 195484 ||| | || | |||||||| || || || || ||| |||||||| | ||| || || Sbjct 1045825 GAAAGACTGATCGGAGATGCAGCCAAGAACCAAGTAGCCATGAACCCCAACAACACAGTG 1045884 Query 195485 TTTG 195488 |||| Sbjct 1045885 TTTG 1045888 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657785282080160