Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinus_20carpio_20[refseq_20GCF_5F000951615.1_202014-11-03] 9,378 sequences; 1,713,658,011 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq10 86.0 1e-11 >seq10 Length=22665327 Score = 86.0 bits (94), Expect = 1e-11 Identities = 168/245 (69%), Gaps = 4/245 (2%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || || || || ||||| | || | ||| || || | ||| || ||| || || ||| Sbjct 4886458 ATGCCTCCCCTGAGACGCAGCACCAGATGCAAGGTGGACTCCTTCTGGATGTTGTAGTCA 4886399 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | ||| || |||| |||| ||||| ||||||||||| | ||||| || ||||| Sbjct 4886398 GACAGTGTGCGACCATCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGG- 4886340 Query 192427 GGTATTCCTTC--TTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATT 192484 || || ||||| ||| ||| | |||| | || || || || | || | | Sbjct 4886339 GGAATGCCTTCCTTTTGTCTGGATTTTTGTCCTTGACGTTCTCAATGGTGTCACTTGGCT 4886280 Query 192485 CTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTTATTAG 192544 | || || ||||| ||||| || ||||| | ||||| | ||| ||||||| | ||||| Sbjct 4886279 CAACCTCAAGAGTGATGGTCTTGCCAGTGAGGGTTTTGACAAAGATCTGCA-TCTATTAA 4886221 Query 192545 AAAAA 192549 |||| Sbjct 4886220 CAAAA 4886216 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984361709190300