Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinus_20carpio_20[refseq_20GCF_5F000951615.1_202014-11-03] 9,378 sequences; 1,713,658,011 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq10 91.5 1e-13 seq445 86.0 6e-12 >seq10 Length=22665327 Score = 91.5 bits (100), Expect = 1e-13 Identities = 167/235 (71%), Gaps = 11/235 (5%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||||||| | ||||| || || || || || || || || || || || | | Sbjct 4886227 GATGCAGATCTTTGTCAAAACCCTCACTGGCAAGACCATCACTCTTGAGGTTGAGCCAAG 4886286 Query 24763 CGACACAGTAGAAACGGTAAA--ACAAAAGATCCAAGACAAA--GAAGGAATACCTCCCG 24818 ||||| | || | || || |||||| ||||| |||||| ||||| || || || | Sbjct 4886287 TGACACCATTGAGAACGTCAAGGACAAAA-ATCCA-GACAAAAGGAAGGCATTCC-CCTG 4886343 Query 24819 ATCAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT--TCGAGAAACATGTCAGA 24876 | || || | |||||||||| || ||||||||||| ||| ||| | || |||| || Sbjct 4886344 ACCAGCAGAGGCTGATCTTTGCTGGCAAACAGCTGGAAGATGGTCG-CACAC-TGTCTGA 4886401 Query 24877 TTATAACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || ||||| || ||||| || || | || ||||| |||| | | |||||| Sbjct 4886402 CTACAACATCCAGAAGGAGTCCACCTTGCATCTGGTGCTGCGTCTCAGGGGAGGC 4886456 >seq445 Length=552131 Score = 86.0 bits (94), Expect = 6e-12 Identities = 86/112 (77%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 139121 TGTATTCGACAATTTCGGCACACAAATTACTACACTTGATCGTACCTAAATTTTGTTGAT 139180 |||| || |||||||| | ||||| ||||| || || || || || | || || || | Sbjct 60565 TGTACTCTACAATTTCTGTGCACAAGTTACTGCATTTAATGGTGCCCAGGTTCTGCTGGT 60506 Query 139181 TGCTTTTTCGGTTACAAGCATCTTTGTAAAGCATATACGGTGTGCCAGTTTC 139232 | ||||| ||||| || ||||| ||||| ||||| || ||||||||||| || Sbjct 60505 TACTTTTGCGGTTGCAGGCATCCTTGTAGAGCATGTAGGGTGTGCCAGTCTC 60454 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449844860753840