Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinus_20carpio_20[refseq_20GCF_5F000951615.1_202014-11-03] 9,378 sequences; 1,713,658,011 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq30 109 5e-19 seq308 104 2e-17 >seq30 Length=18521859 Score = 109 bits (120), Expect = 5e-19 Identities = 126/170 (74%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 34315 AGCTCAGTCTCCGGGTTGTCACATTCCGGACACAACACAAACTTGCGGATGAAACCATCA 34374 || ||||| || ||||||||||| || | |||| |||||||||||||||||| || || Sbjct 4793572 AGGTCAGTTTCAGGGTTGTCACACTCGGAGCACAGCACAAACTTGCGGATGAATCCGTCC 4793631 Query 34375 AGCAGGTCCTGTAACTTAACGGAGTCGTGGGAGCCGTTGACGATGAATCGTTCGTTTTTG 34434 |||| |||||| | || || || ||||| ||||| |||||| | || || || || Sbjct 4793632 AGCATGTCCTGCAGTTTGTTGGCTTCATGGGATCCGTTTACGATGTAGCGGTCATTCTTA 4793691 Query 34435 TAATCGACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGG 34484 ||| | ||| || ||||| |||| ||| || || || |||| || || Sbjct 4793692 GCATCAAACTGAGTCTGCGCCCCCAACTCACAGCCAAAAAACTTAGTTGG 4793741 Score = 95.1 bits (104), Expect = 1e-14 Identities = 123/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 34315 AGCTCAGTCTCCGGGTTGTCACATTCCGGACACAACACAAACTTGCGGATGAAACCATCA 34374 || || || || || |||||||| || | |||| |||||||||||||||||| || || Sbjct 4969552 AGGTCGGTTTCAGGATTGTCACACTCGGAGCACAGCACAAACTTGCGGATGAATCCGTCC 4969611 Query 34375 AGCAGGTCCTGTAACTTAACGGAGTCGTGGGAGCCGTTGACGATGAATCGTTCGTTTTTG 34434 |||| |||||| | || || || ||||| ||||| || ||| | || || || || Sbjct 4969612 AGCATGTCCTGCAGTTTGTTGGCTTCATGGGATCCGTTTACAATGTAGCGGTCATTCTTA 4969671 Query 34435 TAATCGACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGG 34484 ||| | ||| || ||||| |||| ||| || || || |||| || || Sbjct 4969672 GCATCAAACTGAGTCTGCGCCCCCAACTCACAGCCAAAAAACTTAGTTGG 4969721 >seq308 Length=1193138 Score = 104 bits (114), Expect = 2e-17 Identities = 123/167 (74%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 34318 TCAGTCTCCGGGTTGTCACATTCCGGACACAACACAAACTTGCGGATGAAACCATCAAGC 34377 ||||| || || |||||||| || ||||||| |||||||||||| ||||| ||||| ||| Sbjct 841775 TCAGTTTCAGGATTGTCACACTCAGGACACAGCACAAACTTGCGAATGAATCCATCGAGC 841834 Query 34378 AGGTCCTGTAACTTAACGGAGTCGTGGGAGCCGTTGACGATGAATCGTTCGTTTTTGTAA 34437 | ||| || | || | || || || || ||||||||| | || || || ||| | Sbjct 841835 ATGTCTTGCAGTTTGTTTGCCTCATGAGATCCATTGACGATGTAGCGGTCATTCTTGGTA 841894 Query 34438 TCGACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGG 34484 || | ||| ||||| || |||| ||| || || ||| | || || || Sbjct 841895 TCAAACTGGGTTTGGGCTCCCAACTCACAACCAAAGAATTTGGTGGG 841941 Score = 89.7 bits (98), Expect = 4e-13 Identities = 120/167 (72%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 34318 TCAGTCTCCGGGTTGTCACATTCCGGACACAACACAAACTTGCGGATGAAACCATCAAGC 34377 ||||| || || |||||||| || ||||||| |||||||||||| ||||| || || ||| Sbjct 916035 TCAGTTTCAGGATTGTCACACTCAGGACACAGCACAAACTTGCGAATGAATCCGTCTAGC 916094 Query 34378 AGGTCCTGTAACTTAACGGAGTCGTGGGAGCCGTTGACGATGAATCGTTCGTTTTTGTAA 34437 | ||| || | || | || || || || ||||| ||| | || || || ||| | Sbjct 916095 ATGTCTTGCAGTTTGTTTGCCTCATGAGATCCATTGACAATGTAGCGGTCATTCTTGGCA 916154 Query 34438 TCGACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGG 34484 || | ||| || || || |||| ||| || || ||| | || || || Sbjct 916155 TCAAACTGGGTCTGGGCTCCCAACTCACAACCAAAGAATTTGGTGGG 916201 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412794414527354