Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinus_20carpio_20[refseq_20GCF_5F000951615.1_202014-11-03] 9,378 sequences; 1,713,658,011 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq10 123 2e-23 >seq10 Length=22665327 Score = 123 bits (136), Expect = 2e-23 Identities = 166/229 (72%), Gaps = 3/229 (1%) Strand=Plus/Minus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 |||||||| | | ||| ||||| || | |||| ||||||||| ||||| ||||| || Sbjct 4886455 CCTCCCCTGAGACGCAGCACCAGATGCAAGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 4886396 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 || |||| |||| ||||| || || || || |||||||| | |||||||| | || Sbjct 4886395 AGTGTGCGACCATCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGG-GGA 4886337 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGT--TTGACGGATGCTATCGATTCATTGGCCTCGA 34928 | || ||||| | | ||||||| |||||| | || | ||| | | ||| | Sbjct 4886336 ATGCCTTCCTTTTGTCTGGATTTTTGTCCTTGACGTTCTCAATGGTGTCACTTGGCTCAA 4886277 Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | |||| || |||||||| || |||||||| || |||||||||||||| Sbjct 4886276 CCTCAAGAGTGATGGTCTTGCCAGTGAGGGTTTTGACAAAGATCTGCAT 4886228 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325655575144982