Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinus_20carpio_20[refseq_20GCF_5F000951615.1_202014-11-03] 9,378 sequences; 1,713,658,011 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq10 84.2 2e-11 >seq10 Length=22665327 Score = 84.2 bits (92), Expect = 2e-11 Identities = 149/215 (69%), Gaps = 3/215 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || ||||||||||| | || ||||| ||||| || | || ||| | | Sbjct 4886228 ATGCAGATCTTTGTCAAAACCCTCACTGGCAAGACCATCACTCTTGAGGTTGAGCCAAGT 4886287 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAA--GAAGGCGTGCCCGTGGATC 107673 || || | | | || || | || | | | || ||| |||||| | ||| | || | Sbjct 4886288 GACACCATTGAGAACGTCAAGGACAAAAATCCAGACAAAAGGAAGGCATTCCCCT-GACC 4886346 Query 107674 AGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACA 107733 ||||||| || || | ||| || ||||||||||| || | ||| || | ||||||| Sbjct 4886347 AGCAGAGGCTGATCTTTGCTGGCAAACAGCTGGAAGATGGTCGCACACTGTCTGACTACA 4886406 Query 107734 ACATTCAAAAGGAGTCTACGTTGCACATGGTGTTG 107768 |||| || |||||||| || ||||| ||||| || Sbjct 4886407 ACATCCAGAAGGAGTCCACCTTGCATCTGGTGCTG 4886441 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398831210625442