Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinus_20carpio_20[refseq_20GCF_5F000951615.1_202014-11-03] 9,378 sequences; 1,713,658,011 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq10 140 2e-28 >seq10 Length=22665327 Score = 140 bits (154), Expect = 2e-28 Identities = 172/231 (74%), Gaps = 7/231 (3%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 |||||||| | ||||||||||| ||| | ||||| || || || ||||| || || | Sbjct 4886455 CCTCCCCTGAGACGCAGCACCAGATGCAAGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 4886396 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| ||| || || |||||||||||| | |||| || ||||| || || ||| Sbjct 4886395 AGTGTGCGACCATCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGG-GGA 4886337 Query 29680 ATACCCTC--TTTGTCTTGTAATTTTTGT--TTGACAGTTTCTACAGTGTCAGAAAGTTC 29735 || || || ||||||| | |||||||| ||||| | || | |||||| | || Sbjct 4886336 ATGCCTTCCTTTTGTCTGG--ATTTTTGTCCTTGACGTTCTCAATGGTGTCACTTGGCTC 4886279 Query 29736 TACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || |||||||| || || |||||||| | |||||| ||||| |||||||| Sbjct 4886278 AACCTCAAGAGTGATGGTCTTGCCAGTGAGGGTTTTGACAAAGATCTGCAT 4886228 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385175171612298