Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cyprinus_20carpio_20[refseq_20GCF_5F000951615.1_202014-11-03]
9,378 sequences; 1,713,658,011 total letters
Query= NC_023639.1
Length=1168989
Score E
Sequences producing significant alignments: (Bits) Value
seq14 114 1e-19
seq29 105 5e-17
seq18 105 5e-17
seq19 104 2e-16
>seq14
Length=18393167
Score = 114 bits (126), Expect = 1e-19
Identities = 137/186 (74%), Gaps = 0/186 (0%)
Strand=Plus/Minus
Query 282690 CAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCAGAT 282749
|||| | |||||||| || || | ||| |||||| |||||| ||||||||||||||
Sbjct 7874297 CAAAGACTGTATTGGTGGGGTTCATTGCTACTTGATTTTTGGCAGCATCTCCAATCAGCC 7874238
Query 282750 GTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAA 282809
||||| ||||| |||| ||||| |||||| || | ||||| || ||||| ||||
Sbjct 7874237 TCTCTGTGTCTGTGAATGCTACATAACTTGGAGTGGTCCTGTTACCCTGGTCATTGGCAA 7874178
Query 282810 TAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAA 282869
| ||||||||||| |||| || | || || ||||| | || || || | |||||
Sbjct 7874177 TGATTTCAACTTTGCCATGCTGAAAGACCCCCACACAGGAGTAGGTGGTCCCCAGATCAA 7874118
Query 282870 TACCAA 282875
| ||||
Sbjct 7874117 TGCCAA 7874112
Score = 86.0 bits (94), Expect = 5e-11
Identities = 116/162 (72%), Gaps = 0/162 (0%)
Strand=Plus/Minus
Query 281767 TTGAATAGCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTT 281826
|||| || | || |||||||| ||||||||||| ||||| | | | || |||| ||
Sbjct 7874935 TTGATTACCTGCTCCATATGCGACAGCTTCATCCGGATTGATGCTCTTGTTCAGTTCCTT 7874876
Query 281827 ACCATTGAAAAAATTTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAAC 281886
|||||||| || | || || | | | ||| || ||||| | |||||||||||
Sbjct 7874875 CCCATTGAAGAAGTCCTGCAGCAGCTTTTGGATCTTTGGGATACGGGTGGATCCTCCAAC 7874816
Query 281887 TAATACAATTTCATGCACCTGTGATTTATCCAGTTTTGAATC 281928
| ||||| ||||| ||||| || || |||||||| | |||
Sbjct 7874815 AAGGACAATGTCATGAACCTGAGACTTGTCCAGTTTAGCATC 7874774
>seq29
Length=17515369
Score = 105 bits (116), Expect = 5e-17
Identities = 135/186 (73%), Gaps = 0/186 (0%)
Strand=Plus/Minus
Query 282690 CAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCAGAT 282749
|||| | |||||||| || || | ||| |||||| |||||| ||||||||||||||
Sbjct 5890593 CAAAGACTGTATTGGTGGGGTTCATTGCTACTTGATTTTTGGCAGCATCTCCAATCAGCC 5890534
Query 282750 GTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAA 282809
||||| ||||| |||| ||||| ||| || || | ||||| || ||||| ||||
Sbjct 5890533 TCTCTGTGTCTGTGAATGCTACATAACTTGGTGTGGTCCTGTTACCCTGGTCATTGGCAA 5890474
Query 282810 TAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAA 282869
| ||||||||||| |||| || | || || || || | || || || | |||||
Sbjct 5890473 TGATTTCAACTTTGCCATGCTGAAAGACCCCCACGCAGGAGTAGGTGGTCCCCAGATCAA 5890414
Query 282870 TACCAA 282875
| ||||
Sbjct 5890413 TGCCAA 5890408
Score = 104 bits (114), Expect = 2e-16
Identities = 108/142 (76%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391
|| || || |||||||| |||| |||||||||||||| ||||| || |||| | ||||
Sbjct 5892563 TTCTTGTCCAGACCATAGGCAATGGCAGCAGCAGTTGGCTCATTGATGATTCGTAGAACA 5892504
Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451
|| || |||| || | || ||||| |||||||| || | || || || || || ||
Sbjct 5892503 TTGAGGCCAGAGATAGTCCCAGCATCCTTAGTGGCCTGGCGCTGAGAGTCATTGAAGTAA 5892444
Query 282452 GCAGGAACAGTAATAACGGCAT 282473
||||| || |||||||| ||||
Sbjct 5892443 GCAGGTACTGTAATAACAGCAT 5892422
>seq18
Length=22437665
Score = 105 bits (116), Expect = 5e-17
Identities = 106/138 (77%), Gaps = 0/138 (0%)
Strand=Plus/Plus
Query 282690 CAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCAGAT 282749
|||| | |||||||| || || | ||| |||||| |||||| ||||||||||||||
Sbjct 19514103 CAAAGACTGTATTGGTGGGGTTCATTGCTACTTGATTTTTGGCAGCATCTCCAATCAGCC 19514162
Query 282750 GTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAA 282809
||||| ||||| |||| ||||| ||| || || | ||||| || ||||| ||||
Sbjct 19514163 TCTCTGTGTCTGTGAATGCTACATAACTTGGTGTGGTCCTGTTACCCTGGTCATTGGCAA 19514222
Query 282810 TAATTTCAACTTTACCAT 282827
| ||||||||||| ||||
Sbjct 19514223 TGATTTCAACTTTGCCAT 19514240
>seq19
Length=7320473
Score = 104 bits (114), Expect = 2e-16
Identities = 139/191 (73%), Gaps = 2/191 (1%)
Strand=Plus/Plus
Query 282690 CAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCAGAT 282749
|||| | || ||||| || || | || | || | ||| || ||||||||||||| ||
Sbjct 1806148 CAAAGACTGTGTTGGTGGGGTTCATGGCGACCTGGTTTTTTGCGGCATCTCCAATCA-AT 1806206
Query 282750 GT-TCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCA 282808
| || | || || || | ||||| |||||| || || || ||||| ||||| |||
Sbjct 1806207 CTCTCAGAATCGGTGAAAGCTACATAGCTTGGAGTGGTCCGGTTTCCTTGGTCATTAGCA 1806266
Query 282809 ATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCA 282868
|| ||||||||||| |||| ||| | |||||||||||| | || || || | ||||
Sbjct 1806267 ATGATTTCAACTTTTCCATGTTGGAAAACACCTACACAAGAGTAGGTGGTCCCGAGATCA 1806326
Query 282869 ATACCAATAGC 282879
||||||| |||
Sbjct 1806327 ATACCAACAGC 1806337
Score = 95.1 bits (104), Expect = 9e-14
Identities = 135/190 (71%), Gaps = 0/190 (0%)
Strand=Plus/Plus
Query 282690 CAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCAGAT 282749
|||| | || ||||| || || | || | || | ||| || |||||||||||||
Sbjct 1718702 CAAAGACTGTGTTGGTGGGGTTCATGGCGACCTGGTTTTTTGCAGCATCTCCAATCAACC 1718761
Query 282750 GTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAA 282809
| || || ||||| || | ||||| ||| || || | || ||||| ||||| || |
Sbjct 1718762 GCTCAGTATCTGTGAAAGCTACATAGCTTGGCGTGGTCCTGTTTCCTTGGTCATTAGCGA 1718821
Query 282810 TAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAA 282869
| ||||||||||| |||| ||| | ||||||||||| | || || || | |||||
Sbjct 1718822 TGATTTCAACTTTTCCATGTTGGAAGACACCTACACAGGAGTAGGTGGTCCCGAGATCAA 1718881
Query 282870 TACCAATAGC 282879
|||||| |||
Sbjct 1718882 TACCAACAGC 1718891
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3740169979831428
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |