Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinus_20carpio_20[refseq_20GCF_5F000951615.1_202014-11-03] 9,378 sequences; 1,713,658,011 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq14 114 1e-19 seq29 105 5e-17 seq18 105 5e-17 seq19 104 2e-16 >seq14 Length=18393167 Score = 114 bits (126), Expect = 1e-19 Identities = 137/186 (74%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 282690 CAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCAGAT 282749 |||| | |||||||| || || | ||| |||||| |||||| |||||||||||||| Sbjct 7874297 CAAAGACTGTATTGGTGGGGTTCATTGCTACTTGATTTTTGGCAGCATCTCCAATCAGCC 7874238 Query 282750 GTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAA 282809 ||||| ||||| |||| ||||| |||||| || | ||||| || ||||| |||| Sbjct 7874237 TCTCTGTGTCTGTGAATGCTACATAACTTGGAGTGGTCCTGTTACCCTGGTCATTGGCAA 7874178 Query 282810 TAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAA 282869 | ||||||||||| |||| || | || || ||||| | || || || | ||||| Sbjct 7874177 TGATTTCAACTTTGCCATGCTGAAAGACCCCCACACAGGAGTAGGTGGTCCCCAGATCAA 7874118 Query 282870 TACCAA 282875 | |||| Sbjct 7874117 TGCCAA 7874112 Score = 86.0 bits (94), Expect = 5e-11 Identities = 116/162 (72%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 281767 TTGAATAGCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTT 281826 |||| || | || |||||||| ||||||||||| ||||| | | | || |||| || Sbjct 7874935 TTGATTACCTGCTCCATATGCGACAGCTTCATCCGGATTGATGCTCTTGTTCAGTTCCTT 7874876 Query 281827 ACCATTGAAAAAATTTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAAC 281886 |||||||| || | || || | | | ||| || ||||| | ||||||||||| Sbjct 7874875 CCCATTGAAGAAGTCCTGCAGCAGCTTTTGGATCTTTGGGATACGGGTGGATCCTCCAAC 7874816 Query 281887 TAATACAATTTCATGCACCTGTGATTTATCCAGTTTTGAATC 281928 | ||||| ||||| ||||| || || |||||||| | ||| Sbjct 7874815 AAGGACAATGTCATGAACCTGAGACTTGTCCAGTTTAGCATC 7874774 >seq29 Length=17515369 Score = 105 bits (116), Expect = 5e-17 Identities = 135/186 (73%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 282690 CAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCAGAT 282749 |||| | |||||||| || || | ||| |||||| |||||| |||||||||||||| Sbjct 5890593 CAAAGACTGTATTGGTGGGGTTCATTGCTACTTGATTTTTGGCAGCATCTCCAATCAGCC 5890534 Query 282750 GTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAA 282809 ||||| ||||| |||| ||||| ||| || || | ||||| || ||||| |||| Sbjct 5890533 TCTCTGTGTCTGTGAATGCTACATAACTTGGTGTGGTCCTGTTACCCTGGTCATTGGCAA 5890474 Query 282810 TAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAA 282869 | ||||||||||| |||| || | || || || || | || || || | ||||| Sbjct 5890473 TGATTTCAACTTTGCCATGCTGAAAGACCCCCACGCAGGAGTAGGTGGTCCCCAGATCAA 5890414 Query 282870 TACCAA 282875 | |||| Sbjct 5890413 TGCCAA 5890408 Score = 104 bits (114), Expect = 2e-16 Identities = 108/142 (76%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 || || || |||||||| |||| |||||||||||||| ||||| || |||| | |||| Sbjct 5892563 TTCTTGTCCAGACCATAGGCAATGGCAGCAGCAGTTGGCTCATTGATGATTCGTAGAACA 5892504 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 || || |||| || | || ||||| |||||||| || | || || || || || || Sbjct 5892503 TTGAGGCCAGAGATAGTCCCAGCATCCTTAGTGGCCTGGCGCTGAGAGTCATTGAAGTAA 5892444 Query 282452 GCAGGAACAGTAATAACGGCAT 282473 ||||| || |||||||| |||| Sbjct 5892443 GCAGGTACTGTAATAACAGCAT 5892422 >seq18 Length=22437665 Score = 105 bits (116), Expect = 5e-17 Identities = 106/138 (77%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 282690 CAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCAGAT 282749 |||| | |||||||| || || | ||| |||||| |||||| |||||||||||||| Sbjct 19514103 CAAAGACTGTATTGGTGGGGTTCATTGCTACTTGATTTTTGGCAGCATCTCCAATCAGCC 19514162 Query 282750 GTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAA 282809 ||||| ||||| |||| ||||| ||| || || | ||||| || ||||| |||| Sbjct 19514163 TCTCTGTGTCTGTGAATGCTACATAACTTGGTGTGGTCCTGTTACCCTGGTCATTGGCAA 19514222 Query 282810 TAATTTCAACTTTACCAT 282827 | ||||||||||| |||| Sbjct 19514223 TGATTTCAACTTTGCCAT 19514240 >seq19 Length=7320473 Score = 104 bits (114), Expect = 2e-16 Identities = 139/191 (73%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 282690 CAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCAGAT 282749 |||| | || ||||| || || | || | || | ||| || ||||||||||||| || Sbjct 1806148 CAAAGACTGTGTTGGTGGGGTTCATGGCGACCTGGTTTTTTGCGGCATCTCCAATCA-AT 1806206 Query 282750 GT-TCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCA 282808 | || | || || || | ||||| |||||| || || || ||||| ||||| ||| Sbjct 1806207 CTCTCAGAATCGGTGAAAGCTACATAGCTTGGAGTGGTCCGGTTTCCTTGGTCATTAGCA 1806266 Query 282809 ATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCA 282868 || ||||||||||| |||| ||| | |||||||||||| | || || || | |||| Sbjct 1806267 ATGATTTCAACTTTTCCATGTTGGAAAACACCTACACAAGAGTAGGTGGTCCCGAGATCA 1806326 Query 282869 ATACCAATAGC 282879 ||||||| ||| Sbjct 1806327 ATACCAACAGC 1806337 Score = 95.1 bits (104), Expect = 9e-14 Identities = 135/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 282690 CAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCAGAT 282749 |||| | || ||||| || || | || | || | ||| || ||||||||||||| Sbjct 1718702 CAAAGACTGTGTTGGTGGGGTTCATGGCGACCTGGTTTTTTGCAGCATCTCCAATCAACC 1718761 Query 282750 GTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAA 282809 | || || ||||| || | ||||| ||| || || | || ||||| ||||| || | Sbjct 1718762 GCTCAGTATCTGTGAAAGCTACATAGCTTGGCGTGGTCCTGTTTCCTTGGTCATTAGCGA 1718821 Query 282810 TAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAA 282869 | ||||||||||| |||| ||| | ||||||||||| | || || || | ||||| Sbjct 1718822 TGATTTCAACTTTTCCATGTTGGAAGACACCTACACAGGAGTAGGTGGTCCCGAGATCAA 1718881 Query 282870 TACCAATAGC 282879 |||||| ||| Sbjct 1718882 TACCAACAGC 1718891 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740169979831428