Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinus_20carpio_20[refseq_20GCF_5F000951615.1_202014-11-03] 9,378 sequences; 1,713,658,011 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq10 125 1e-23 seq309 87.8 4e-12 seq30 84.2 4e-11 >seq10 Length=22665327 Score = 125 bits (138), Expect = 1e-23 Identities = 172/235 (73%), Gaps = 4/235 (2%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| || | |||||| || | |||| || || || ||||| || || || ||||| Sbjct 4886455 CCTCCCCTGAGACGCAGCACCAGATGCAAGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 4886396 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | ||| ||||| || ||||| ||||||||||| || || || || || || || Sbjct 4886395 AGTGTGCGACCATCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGG-GGA 4886337 Query 82704 ATTCCTTCCTTATCT-TGAATCTTTG-CTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 || |||||||| | | || || |||| | || || || ||||| || ||| | || || | Sbjct 4886336 ATGCCTTCCTTTTGTCTGGATTTTTGTCCTTGACGTTCTCAATGGTGTCACTTGGCTCAA 4886277 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT-TATTA 82815 | || | ||| || |||||||| || | || || ||||| |||||||| ||||| Sbjct 4886276 CCTCAAGAGTGATGGTCTTGCCAGTGAGGGTTTTGACAAAGATCTGCATCTATTA 4886222 >seq309 Length=442048 Score = 87.8 bits (96), Expect = 4e-12 Identities = 122/171 (71%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 60139 GATAGCCAGAGCATTATGGTGGTACTATATATCTAAAGGTATAGAATACTTAGATACGGT 60198 |||||| |||| ||||||||||||| || ||||| || | || | | || || || Sbjct 136149 GATAGCGTCAGCACTATGGTGGTACTACATCTCTAAGGGGGTGGAGTTTCTGGACACAGT 136208 Query 60199 GTTTTTCATACTTAGGAAAAAGTTTAATCAGGTTAGTTTTTTACACGTATATCATCATTT 60258 ||| ||||| | ||||| |||||||||||||| || || | ||||| ||||| || | Sbjct 136209 GTTCTTCATCATGAGGAAGAAGTTTAATCAGGTCAGCTTCCTGCACGTCTATCACCACTG 136268 Query 60259 TACTATGTTTACTTTAGGATGGGTAGGCATTAAATGGTTTGCCGGAGGTCA 60309 || ||||| | | | ||| | ||||| || ||| || | || || || Sbjct 136269 CACAATGTTCATCCTGTGGTGGATCGGCATCAAGTGGGTTCCTGGTGGACA 136319 >seq30 Length=18521859 Score = 84.2 bits (92), Expect = 4e-11 Identities = 121/171 (71%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 60139 GATAGCCAGAGCATTATGGTGGTACTATATATCTAAAGGTATAGAATACTTAGATACGGT 60198 |||||| ||| ||||||||||||| || ||||| || | || | | || || || Sbjct 12815091 GATAGCGTCAGCGCTATGGTGGTACTACATCTCTAAGGGGGTGGAGTTTCTGGACACAGT 12815032 Query 60199 GTTTTTCATACTTAGGAAAAAGTTTAATCAGGTTAGTTTTTTACACGTATATCATCATTT 60258 || ||||| | ||||| |||||||||||||| || ||| | ||||| ||||| || | Sbjct 12815031 CTTCTTCATCATGAGGAAGAAGTTTAATCAGGTCAGCTTTCTGCACGTCTATCACCACTG 12814972 Query 60259 TACTATGTTTACTTTAGGATGGGTAGGCATTAAATGGTTTGCCGGAGGTCA 60309 || ||||| | | | ||| | ||||| || ||| || | || || || Sbjct 12814971 CACAATGTTCATCCTGTGGTGGATTGGCATCAAGTGGGTTCCTGGTGGACA 12814921 Score = 84.2 bits (92), Expect = 4e-11 Identities = 121/171 (71%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 60139 GATAGCCAGAGCATTATGGTGGTACTATATATCTAAAGGTATAGAATACTTAGATACGGT 60198 |||||| ||| ||||||||||||| || ||||| || | || | | || || || Sbjct 12815707 GATAGCGTCAGCGCTATGGTGGTACTACATCTCTAAGGGGGTGGAGTTTCTGGACACAGT 12815648 Query 60199 GTTTTTCATACTTAGGAAAAAGTTTAATCAGGTTAGTTTTTTACACGTATATCATCATTT 60258 || ||||| | ||||| |||||||||||||| || ||| | ||||| ||||| || | Sbjct 12815647 CTTCTTCATCATGAGGAAGAAGTTTAATCAGGTCAGCTTTCTGCACGTCTATCACCACTG 12815588 Query 60259 TACTATGTTTACTTTAGGATGGGTAGGCATTAAATGGTTTGCCGGAGGTCA 60309 || ||||| | | | ||| | ||||| || ||| || | || || || Sbjct 12815587 CACAATGTTCATCCTGTGGTGGATTGGCATCAAGTGGGTTCCTGGTGGACA 12815537 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981709227939142