Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinus_20carpio_20[refseq_20GCF_5F000951615.1_202014-11-03] 9,378 sequences; 1,713,658,011 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq1386 138 1e-27 >seq1386 Length=588748 Score = 138 bits (152), Expect = 1e-27 Identities = 274/404 (68%), Gaps = 4/404 (1%) Strand=Plus/Minus Query 176888 CCAGTTAAAGTATTGAAGATAAAGGGTGACGTTTTTATCGATGGCGTTGAGGTGCGAGGC 176947 ||||| |||||| | || ||||| |||||||||| | | ||| | || Sbjct 233797 CCAGTCAAAGTACTTCAGGTAAAGCTCCTCGTTTTTATCAAGGAACAGGAGATAATCAGC 233738 Query 176948 CAGTTCTATAGGGGACGTGTAGTCGTTCACGTGAATGAAAGCGTCTCCCGGGACGTAATT 177007 ||| || | || |||| | |||| | | ||| |||||||| | |||| | || | || Sbjct 233737 CAGCTCCTTCGGAGACGGGAAGTCATCAATGTGGATGAAAGCATTTCCCTGCACAAAGTT 233678 Query 177008 TTCGTAATTCTCTCTCGATGTTCCGAGTACTATGGGTACCGCACCTGCCATAAGAGATCG 177067 | || ||||| || | || |||||| || ||||| || | || || ||| | Sbjct 233677 CTGATAGTTCTCCCTTGGTGGTCCGAGCACAATGGGAACGGTGCCAACCGAAAGCGGGTT 233618 Query 177068 GTAGAGTTTTTCGGTAATATAGTCCCTGTGTACGGAGTTCTCAAACGCGAGATAGAATTT 177127 ||| | ||| || || |||||||| |||| | ||||||||||| || | ||| ||||| Sbjct 233617 GTACAATTTCTCAGTGATATAGTCTTTGTGAATCGAGTTCTCAAATGCCAAATAAAATTT 233558 Query 177128 ACAGGAAG--ATAGTAGCGGGATGAAGTCATCATCGGGTATATAATCTCCTACTACGTTC 177185 |||| | || |||| | || |||| | |||| || || || || | | | | Sbjct 233557 ACAGCTTGCAATTGTAGGGAAAT--AGTCCTGGTCGGAAATGTACTCACCAAATGCTTGT 233500 Query 177186 CCGTATACATGTATATCTATGTGTTTACTGAGCTCTAGGTAGTATCTCGATCTCACGTGG 177245 |||||| |||| | || ||||| || ||| || ||||||| || ||| |||||| Sbjct 233499 CCGTATGCATGAACCTCGATGTGCTTGTAGAGTTCATTGTAGTATTTCACTCTGACGTGG 233440 Query 177246 TCGTTGTTCCAATTGCTGACGACCCAGCAAACTAACTTGCTCTT 177289 || ||||||||||||||||| ||| |||| | |||| |||| Sbjct 233439 TCTGGGTTCCAATTGCTGACGATCCAACAAATCAGCTTGTTCTT 233396 Score = 104 bits (114), Expect = 3e-17 Identities = 149/208 (72%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 177084 ATATAGTCCCTGTGTACGGAGTTCTCAAACGCGAGATAGAATTTACAGGAAG--ATAGTA 177141 |||||||| |||| || ||||||||||| || | ||||||||||||| | || ||| Sbjct 89445 ATATAGTCTTTGTGAACTGAGTTCTCAAATGCCAAATAGAATTTACAGCTTGCAATTGTA 89386 Query 177142 GCGGGATGAAGTCATCATCGGGTATATAATCTCCTACTACGTTCCCGTATACATGTATAT 177201 | || |||| | |||| || || || || | | | | |||||| |||| | | Sbjct 89385 GGAAAAT--AGTCCTGGTCGGAAATGTACTCACCAAATGCTTGTCCGTATGCATGAACCT 89328 Query 177202 CTATGTGTTTACTGAGCTCTAGGTAGTATCTCGATCTCACGTGGTCGTTGTTCCAATTGC 177261 | ||||| || ||| || ||||||| || ||| |||||||| ||||||||||| Sbjct 89327 CGATGTGCTTGTAGAGTTCATTGTAGTATTTCACTCTGACGTGGTCTGGGTTCCAATTGC 89268 Query 177262 TGACGACCCAGCAAACTAACTTGCTCTT 177289 |||||| ||| |||| | |||| |||| Sbjct 89267 TGACGATCCAACAAATCAGCTTGTTCTT 89240 Score = 89.7 bits (98), Expect = 6e-13 Identities = 135/190 (71%), Gaps = 4/190 (2%) Strand=Plus/Minus Query 177102 GAGTTCTCAAACGCGAGATAGAATTTACAGGAAG--ATAGTAGCGGGATGAAGTCATCAT 177159 ||||||||||| || | ||| ||||||||| | || |||| | || |||| | | Sbjct 233233 GAGTTCTCAAATGCCAAATAAAATTTACAGCTTGCAATTGTAGGGAAAT--AGTCCTGGT 233176 Query 177160 CGGGTATATAATCTCCTACTACGTTCCCGTATACATGTATATCTATGTGTTTACTGAGCT 177219 ||| || || || || | | | | |||||| |||| | || ||||| || ||| | Sbjct 233175 CGGAAATGTACTCACCAAATGCTTGTCCGTATGCATGAACCTCGATGTGCTTGTAGAGTT 233116 Query 177220 CTAGGTAGTATCTCGATCTCACGTGGTCGTTGTTCCAATTGCTGACGACCCAGCAAACTA 177279 | ||||||| || ||| |||||||| ||||||||||||||||| ||| |||| | Sbjct 233115 CATTGTAGTATTTCACTCTGACGTGGTCTGGGTTCCAATTGCTGACGATCCAACAAATCA 233056 Query 177280 ACTTGCTCTT 177289 |||| |||| Sbjct 233055 GCTTGTTCTT 233046 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578364193308800