Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinus_20carpio_20[refseq_20GCF_5F000951615.1_202014-11-03] 9,378 sequences; 1,713,658,011 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq10 107 2e-18 seq445 82.4 8e-11 >seq10 Length=22665327 Score = 107 bits (118), Expect = 2e-18 Identities = 165/231 (71%), Gaps = 7/231 (3%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||| ||||| |||| ||| || || | ||||| ||||| || ||||||||||| Sbjct 4886455 CCTCCCCTGAGACGCAGCACCAGATGCAAGGTGGACTCCTTCTGGATGTTGTAGTCAG-- 4886398 Query 134547 ACGGTGTGAGAG--TCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 || ||||| || || || ||||||||||| ||||| |||| | |||||| || || | Sbjct 4886397 ACAGTGTGCGACCATCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGG-G 4886339 Query 134605 GTATGCCTTC--TTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTC 134662 | |||||||| ||| ||| || |||| | ||||| || | ||||| | || Sbjct 4886338 GAATGCCTTCCTTTTGTCTGGATTTTTGTCCTTGACGTTCTCAATGGTGTCACTTGGCTC 4886279 Query 134663 CACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || ||||| ||||| || || || | ||||| || || || ||||| Sbjct 4886278 AACCTCAAGAGTGATGGTCTTGCCAGTGAGGGTTTTGACAAAGATCTGCAT 4886228 >seq445 Length=552131 Score = 82.4 bits (90), Expect = 8e-11 Identities = 98/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 8233 GCCATTATCGAATGTCAAAACGAAACCGGTATGCCGTACATGCTGTACAAAGACGCTTGC 8292 ||||| || || | ||| | || || || | || |||||||| ||||| || || ||| Sbjct 60433 GCCATCATTGAGTCTCAGACAGAGACTGGCACACCCTACATGCTCTACAAGGATGCCTGC 60492 Query 8293 AACGCCAAAAGCAATCAAAGCAACGTGGGCACCATTTGTTGCAGCAATCTGTGCGCTGAA 8352 ||| |||||| || || ||| ||||||||||| ||||| || ||||| | ||| Sbjct 60493 AACCGCAAAAGTAACCAGCAGAACCTGGGCACCATTAAATGCAGTAACTTGTGCACAGAA 60552 Query 8353 ATTGTACAGTACA 8365 |||||| |||||| Sbjct 60553 ATTGTAGAGTACA 60565 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505339154672560