Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinus_20carpio_20[refseq_20GCF_5F000951615.1_202014-11-03] 9,378 sequences; 1,713,658,011 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq40 95.1 1e-14 seq39 93.3 3e-14 seq24 91.5 1e-13 seq586 87.8 1e-12 >seq40 Length=23490330 Score = 95.1 bits (104), Expect = 1e-14 Identities = 91/117 (78%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 43904 CGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCC 43963 || ||| | || ||||| ||| || | ||||| || || || || || || || |||||| Sbjct 14324564 CGATTTACTCAGGAAGTCCAAGTAACTGAAGCCCGTTGCTTCTACGGATTCCAGATTGCC 14324505 Query 43964 ATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 || ||||| || || || |||||||||||||| |||| || || |||||||||||| Sbjct 14324504 ATGGAAAACATCCACTCCGAAATGTACAGTCTGTTGATTGACACTTACATCAAAGAT 14324448 >seq39 Length=16255708 Score = 93.3 bits (102), Expect = 3e-14 Identities = 84/106 (79%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 44482 CTATATTGTACAAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAA 44541 ||||| || |||| || ||||| || ||||| |||||||| ||||| ||||| || || Sbjct 10355699 CTATAAAGTGGAAAATCCTTTTGACTTCATGGAGAATATTTCCTTGGAGGGCAAGACCAA 10355640 Query 44542 CTTTTTTGAAAAACGCGTTGGAGAATATCAGCGAATGGGCGTCATG 44587 ||||||||| || || || || || || ||||| ||||| |||||| Sbjct 10355639 CTTTTTTGAGAAGCGAGTAGGCGAGTACCAGCGGATGGGAGTCATG 10355594 Score = 86.0 bits (94), Expect = 5e-12 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 43904 CGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCC 43963 || ||| | || || || ||| | | ||||| || || || || || || || |||||| Sbjct 10357029 CGATTTACTCAGGAGGTCCAAGTGACTGAAGCCCGTTGCTTCTACGGTTTCCAGATTGCC 10356970 Query 43964 ATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 || ||||| || || || |||||||||||||| |||| || || |||||||||||| Sbjct 10356969 ATGGAAAACATACACTCTGAAATGTACAGTCTGTTGATTGACACCTACATCAAAGAT 10356913 Score = 82.4 bits (90), Expect = 6e-11 Identities = 68/83 (82%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 43700 TTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCG 43759 |||||| | ||||||||||| || |||||||| ||||| |||||||| || ||| |||| Sbjct 10357458 TTTGTCATTTTTCCAATTCAGTACCATGACATCTGGCAGATGTACAAGAAGGCAGAGGCC 10357399 Query 43760 TCATTTTGGACAGCAGAAGAAGT 43782 || || ||||| ||||| || || Sbjct 10357398 TCCTTCTGGACTGCAGAGGAGGT 10357376 >seq24 Length=12449181 Score = 91.5 bits (100), Expect = 1e-13 Identities = 103/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 44119 TTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTT 44178 ||| ||||| ||| | || || ||||||| ||||||||||| ||||| || ||||| || Sbjct 10123776 TTTAGGAGAGCGATTAGTAGCATTTGCAGCAGTGGAAGGCATCTTCTTCTCTGGATCATT 10123717 Query 44179 TGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGA 44238 ||| ||||| | ||||| |||||| |||| ||||||| || | || | || ||||| Sbjct 10123716 TGCTGCCATCTACTGGTTGAAGAAAAGAGGCCTGATGCCCGGACTCACCTACTCCAATGA 10123657 Query 44239 GTTAATAAGTCGTGATGA 44256 | || || | ||||| Sbjct 10123656 ACTCATCAGCAGAGATGA 10123639 >seq586 Length=404773 Score = 87.8 bits (96), Expect = 1e-12 Identities = 71/86 (83%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 47226 TTTTAGGACTTTATGAAAAATCAGGGAAAATATTATTTCTCGGGTTAGACAATGCAGGAA 47285 |||||||||| ||| |||| || |||||| || | ||||| || ||||||||||| |||| Sbjct 177507 TTTTAGGACTCTATAAAAAGTCTGGGAAATTAGTTTTTCTTGGATTAGACAATGCCGGAA 177566 Query 47286 AAACGGCATTACTCCACATGCTCAAA 47311 |||| ||||| | |||||||| ||| Sbjct 177567 AAACAACATTATTGCACATGCTTAAA 177592 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397410573014890