Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cyprinus_20carpio_20[refseq_20GCF_5F000951615.1_202014-11-03]
9,378 sequences; 1,713,658,011 total letters
Query= NC_028091.1
Length=196300
Score E
Sequences producing significant alignments: (Bits) Value
seq445 118 1e-21
seq40 82.4 1e-10
>seq445
Length=552131
Score = 118 bits (130), Expect = 1e-21
Identities = 107/135 (79%), Gaps = 0/135 (0%)
Strand=Plus/Minus
Query 111265 CTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCC 111324
|||||||||| |||||||||| ||||||||| || ||||| | ||||| || ||
Sbjct 60579 CTCATCCTTACTGGTGTACTCTACAATTTCTGTGCACAAGTTACTGCATTTAATGGTGCC 60520
Query 111325 CAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCC 111384
|| |||| |||||||| || |||||| ||||||||||||||||||||||| || ||
Sbjct 60519 CAGGTTCTGCTGGTTACTTTTGCGGTTGCAGGCATCCTTGTAGAGCATGTAGGGTGTGCC 60460
Query 111385 CGTCTCCGTCTGTGA 111399
||||| ||||| ||
Sbjct 60459 AGTCTCTGTCTGAGA 60445
>seq40
Length=23490330
Score = 82.4 bits (90), Expect = 1e-10
Identities = 93/122 (76%), Gaps = 2/122 (2%)
Strand=Plus/Plus
Query 122678 CCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACCCCGCTTCT 122737
||||||||| | ||||||||||| |||||| || || |||||||| || | |||||
Sbjct 14323891 CCTCATCTCTGCTGATAAGTTCATTGGAGAAGGTGAGTCCCGGCATGAGTCCTCTCTTCT 14323950
Query 122738 TCAACCAATAAATAG-CGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAAC 122796
| | ||| |||||| ||| || ||||| || |||||||| || |||||| |||||
Sbjct 14323951 TTAGCCAGAAAATAGAAGCA-AAAGACCCAGAAAAGAAGATTCCTTCCACAGCAGCAAAA 14324009
Query 122797 GC 122798
||
Sbjct 14324010 GC 14324011
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 627958378948800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |