Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinus_20carpio_20[refseq_20GCF_5F000951615.1_202014-11-03] 9,378 sequences; 1,713,658,011 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq445 118 1e-21 seq40 82.4 1e-10 >seq445 Length=552131 Score = 118 bits (130), Expect = 1e-21 Identities = 107/135 (79%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 111265 CTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCC 111324 |||||||||| |||||||||| ||||||||| || ||||| | ||||| || || Sbjct 60579 CTCATCCTTACTGGTGTACTCTACAATTTCTGTGCACAAGTTACTGCATTTAATGGTGCC 60520 Query 111325 CAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCC 111384 || |||| |||||||| || |||||| ||||||||||||||||||||||| || || Sbjct 60519 CAGGTTCTGCTGGTTACTTTTGCGGTTGCAGGCATCCTTGTAGAGCATGTAGGGTGTGCC 60460 Query 111385 CGTCTCCGTCTGTGA 111399 ||||| ||||| || Sbjct 60459 AGTCTCTGTCTGAGA 60445 >seq40 Length=23490330 Score = 82.4 bits (90), Expect = 1e-10 Identities = 93/122 (76%), Gaps = 2/122 (2%) Strand=Plus/Plus Query 122678 CCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACCCCGCTTCT 122737 ||||||||| | ||||||||||| |||||| || || |||||||| || | ||||| Sbjct 14323891 CCTCATCTCTGCTGATAAGTTCATTGGAGAAGGTGAGTCCCGGCATGAGTCCTCTCTTCT 14323950 Query 122738 TCAACCAATAAATAG-CGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAAC 122796 | | ||| |||||| ||| || ||||| || |||||||| || |||||| ||||| Sbjct 14323951 TTAGCCAGAAAATAGAAGCA-AAAGACCCAGAAAAGAAGATTCCTTCCACAGCAGCAAAA 14324009 Query 122797 GC 122798 || Sbjct 14324010 GC 14324011 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627958378948800