Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinus_20carpio_20[refseq_20GCF_5F000951615.1_202014-11-03] 9,378 sequences; 1,713,658,011 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq445 105 8e-18 seq230 86.0 8e-12 seq24 84.2 3e-11 >seq445 Length=552131 Score = 105 bits (116), Expect = 8e-18 Identities = 108/139 (78%), Gaps = 4/139 (3%) Strand=Plus/Minus Query 118739 CTCATCCTTATCAGTGTACTCTATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCC 118798 |||||||||| |||||||||| |||||| ||||||||||| | ||||||||||| Sbjct 60579 CTCATCCTTACTGGTGTACTCTACAATTTCTGTGCACAAGTTACTGCATTTAATGGTGCC 60520 Query 118799 CAAGTTCTTTTGATTTGACTTTGT--GTTACACGCATCCTTGTAAAGCATGTATGGCGTC 118856 || ||||| || || ||||| ||| || ||||||||||| |||||||| || || Sbjct 60519 CAGGTTCTGCTGGTT--ACTTTTGCGGTTGCAGGCATCCTTGTAGAGCATGTAGGGTGTG 60462 Query 118857 CCCGTCTCCGTTTGGGACT 118875 || ||||| || || |||| Sbjct 60461 CCAGTCTCTGTCTGAGACT 60443 >seq230 Length=1256464 Score = 86.0 bits (94), Expect = 8e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 118182 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 118241 ||||| ||| | ||||||||||| | |||||||||| |||| ||| || || |||||| Sbjct 1148754 TAGATGTTGCTAGTGTATGGCTCGATTGACTCATTGTTTCCCAGGATCTGAGCAGTGGAG 1148695 Query 118242 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACG 118276 || |||||||| || |||| || || |||||||| Sbjct 1148694 GCAGTGGGCATAGGAGCCAGCAGCAGACTGTTACG 1148660 >seq24 Length=12449181 Score = 84.2 bits (92), Expect = 3e-11 Identities = 84/109 (77%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 130035 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCT 130094 |||| || | | |||||||||||| ||| || || || ||||| || || | |||| Sbjct 10123637 CCTCATCTCTGCTGATGAGTTCATTGGAGTAGGTGAGTCCGGGCATCAGGCCTCTTTTCT 10123696 Query 130095 TCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCAC 130143 |||||||| | || ||| |||||| |||||||||||||| || ||||| Sbjct 10123697 TCAACCAGTAGATGGCAGCAAATGATCCAGAGAAGAAGATGCCTTCCAC 10123745 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618362703933680