Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinus_20carpio_20[refseq_20GCF_5F000951615.1_202014-11-03] 9,378 sequences; 1,713,658,011 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq10 132 1e-25 seq29 93.3 1e-13 >seq10 Length=22665327 Score = 132 bits (146), Expect = 1e-25 Identities = 159/214 (74%), Gaps = 3/214 (1%) Strand=Plus/Minus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 || || ||||| | || ||||| || || || || || ||||| | ||| || |||||| Sbjct 4886440 AGCACCAGATGCAAGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGTGTGCGACCATCT 4886381 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTC--TTTAT 140643 || || ||||| ||||||||||| || | ||||| ||||| ||||| ||||| ||| | Sbjct 4886380 TCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGG-GGAATGCCTTCCTTTTGT 4886322 Query 140644 CCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTG 140703 | || |||| | || || || ||||| | ||| ||| ||||| ||||| || | | Sbjct 4886321 CTGGATTTTTGTCCTTGACGTTCTCAATGGTGTCACTTGGCTCAACCTCAAGAGTGATGG 4886262 Query 140704 TCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 |||| || || || ||||| ||||| |||||||| Sbjct 4886261 TCTTGCCAGTGAGGGTTTTGACAAAGATCTGCAT 4886228 >seq29 Length=17515369 Score = 93.3 bits (102), Expect = 1e-13 Identities = 104/139 (75%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 349608 ATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATG 349667 ||||||||||||| ||||| || || || ||||| | ||||| || || || |||| Sbjct 5892422 ATGCTGTTATTACAGTACCTGCTTACTTCAATGACTCTCAGCGCCAGGCCACTAAGGATG 5892481 Query 349668 CTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAA 349727 |||| | || | || | ||||||||| |||| || ||||| || |||||||| || | Sbjct 5892482 CTGGGACTATCTCTGGCCTCAATGTTCTACGAATCATCAATGAGCCAACTGCTGCTGCCA 5892541 Query 349728 TTGCATATGGGCTTGATAA 349746 |||| ||||| || || || Sbjct 5892542 TTGCCTATGGTCTGGACAA 5892560 Score = 86.0 bits (94), Expect = 2e-11 Identities = 94/124 (76%), Gaps = 1/124 (1%) Strand=Plus/Plus Query 349771 TCTT-ATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGG 349829 |||| || || ||| | |||||||| ||||||||||| || | || ||| |||| || | Sbjct 5892662 TCTTGATCTTCGATCTTGGTGGTGGCACTTTTGATGTGTCCATTCTTACAATTGAGGACG 5892721 Query 349830 GAATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATA 349889 | || ||||| || || | || || || || || || ||||| |||||||| ||||| | Sbjct 5892722 GCATCTTTGAGGTCAAGTCCACAGCCGGAGACACTCACCTTGGCGGAGAAGACTTTGACA 5892781 Query 349890 ATCG 349893 |||| Sbjct 5892782 ATCG 5892785 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515072333660534