Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinus_20carpio_20[refseq_20GCF_5F000951615.1_202014-11-03] 9,378 sequences; 1,713,658,011 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq37 86.0 7e-12 >seq37 Length=11248262 Score = 86.0 bits (94), Expect = 7e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 ||||| |||||||||| ||| |||||||| || |||||| | ||| |||||||| || Sbjct 612865 GTGAAGATGTAACGAGGGCTGGCAGCATCTTTACCACCATTGATACGGGTACCGAACTGA 612924 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 || |||| | || ||| | |||||| |||||||||||| || ||||| || || Sbjct 612925 CCGAGAGGCTGAAGGATGTTGATATTGTTGCTGCCCACAAAGTTCTGGGCCAAATTCACG 612984 Query 117425 ATCGT 117429 || || Sbjct 612985 ATAGT 612989 Score = 86.0 bits (94), Expect = 7e-12 Identities = 96/126 (76%), Gaps = 2/126 (2%) Strand=Plus/Plus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 ||||||||||| || | |||||| ||||| || ||||| | || || || ||||| Sbjct 612865 GTGAAGATGTAACGAGGGCTGGCAGCATCTTTACCACCATTGATACGGGTACCGAACTGA 612924 Query 152089 CC-AGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCAC 152147 || ||| |||| |||| ||||| |||||| |||||| || ||||| ||||||||||| Sbjct 612925 CCGAGA-GGCTGAAGGATGTTGATATTGTTGCTGCCCACAAAGTTCTGGGCCAAATTCAC 612983 Query 152148 AATCGT 152153 || || Sbjct 612984 GATAGT 612989 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547151852604400