Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyprinus_20carpio_20[refseq_20GCF_5F000951615.1_202014-11-03] 9,378 sequences; 1,713,658,011 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq10 152 6e-32 seq40 91.5 2e-13 seq39 87.8 2e-12 >seq10 Length=22665327 Score = 152 bits (168), Expect = 6e-32 Identities = 168/220 (76%), Gaps = 3/220 (1%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||||||||| || || || |||||||| || ||||||||||||||| || || Sbjct 4886228 ATGCAGATCTTTGTCAAAACCCTCACTGGCAAGACCATCACTCTTGAGGTTGAGCCAAGT 4886287 Query 27466 GATAGCATTGCAAATTTGAAGG-CTAAAATTCAG-GACAAGGAGGGAATTCCTCCAGACC 27523 || | ||||| || | |||| | ||||| ||| | ||||| || ||||| || |||| Sbjct 4886288 GACACCATTGAGAACGTCAAGGACAAAAATCCAGACAAAAGGAAGGCATTCC-CCTGACC 4886346 Query 27524 AGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATA 27583 ||||| | || || |||||||| || || || || |||| ||| || || | ||||| | Sbjct 4886347 AGCAGAGGCTGATCTTTGCTGGCAAACAGCTGGAAGATGGTCGCACACTGTCTGACTACA 4886406 Query 27584 ATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCT 27623 | |||| ||||| ||||| | ||||| || ||||||| Sbjct 4886407 ACATCCAGAAGGAGTCCACCTTGCATCTGGTGCTGCGTCT 4886446 >seq40 Length=23490330 Score = 91.5 bits (100), Expect = 2e-13 Identities = 85/108 (79%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 64726 GCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATTTTCTGGCTA 64785 |||||||| |||||||||||| |||||||||||||| || |||||||||||||||| Sbjct 14324011 GCTTTTGCTGCTGTGGAAGGAATCTTCTTTTCTGGGTCTTTTGCTTCTATTTTCTGGCTA 14323952 Query 64786 AAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATC 64833 || ||| | || || ||||| || || | || || || || || ||| Sbjct 14323951 AAGAAGAGAGGACTCATGCCGGGACTCACCTTCTCCAATGAACTTATC 14323904 >seq39 Length=16255708 Score = 87.8 bits (96), Expect = 2e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 64726 GCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATTTTCTGGCTA 64785 |||||||| ||| |||||||| |||||||||||||| || |||||||||||||||| Sbjct 10356478 GCTTTTGCTGCTGTAGAAGGAATCTTCTTTTCTGGGTCTTTTGCTTCTATTTTCTGGCTA 10356419 Query 64786 AAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATC 64833 || ||| | || || ||||| || || | || || || || || ||| Sbjct 10356418 AAGAAGAGAGGACTCATGCCTGGACTCACCTTCTCCAATGAACTTATC 10356371 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570243545363360